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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.710
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.651
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.624
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.624
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.611
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.611
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.603
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.603
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.602
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.598
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.594
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.590
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.582
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.577
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.576
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.573
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.572
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.560
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.555
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.554
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.552
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.549
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.542
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.538
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.520
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.516
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.513
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.508
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.493
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.473