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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.868
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.773
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.697
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.680
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.626
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.592
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.590
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.585
2nv6ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.569
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.569
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.553
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.546
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.544
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.538
1enzNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.536
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.535
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.521
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.520
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.498
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.473
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.470
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451