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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oabDSTGeranyl diphosphate synthase large subunit

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3oabDSTGeranyl diphosphate synthase large subunit/1.000
3krfDSTGeranyl diphosphate synthase large subunit/0.672
3krfIPEGeranyl diphosphate synthase large subunit/0.560
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.498
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.461
1rqjRISFarnesyl diphosphate synthase2.5.1.100.451
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.442