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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3o7lANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3o7lANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
4iacACPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.486
3x2wATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.468
4xw4ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
3idbANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.456
4wbbADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.453
3x2uATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
3x2vATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441