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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ny9JSZBeta-2 adrenergic receptor

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3ny9JSZBeta-2 adrenergic receptor/1.000
3d4sTIMBeta-2 adrenergic receptor/0.579
5jqhCAUBeta-2 adrenergic receptor/0.548
5d6lCAUBeta-2 adrenergic receptor/0.545
2rh1CAUBeta-2 adrenergic receptor/0.535
5d5bCAUBeta-2 adrenergic receptor/0.524
5d5aCAUBeta-2 adrenergic receptor/0.518
3nyaJTZBeta-2 adrenergic receptor/0.517
4gbrCAUBeta-2 adrenergic receptor/0.500