sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3nta	COA	FAD-dependent pyridine nucleotide-disulphide oxidoreductase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3nta	COA	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	/	1.000
3nt6	COA	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	/	0.625
4ocg	COA	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	/	0.555
3ntd	COA	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	/	0.527
3ict	COA	Coenzyme A disulfide reductase	/	0.465
3cgd	COA	Coenzyme A disulfide reductase	/	0.454
3icr	COA	Coenzyme A disulfide reductase	/	0.446
3cgc	COA	Coenzyme A disulfide reductase	/	0.443
3ics	COA	Coenzyme A disulfide reductase	/	0.442