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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nlpH4BNitric oxide synthase, brain1.14.13.39

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nlpH4BNitric oxide synthase, brain1.14.13.391.000
3nlpJSSNitric oxide synthase, brain1.14.13.390.741
3n5yH4BNitric oxide synthase, brain1.14.13.390.738
3jx2H4BNitric oxide synthase, brain1.14.13.390.732
4jsiH4BNitric oxide synthase, brain1.14.13.390.708
2hx4H4BNitric oxide synthase, brain1.14.13.390.690
3jx5H4BNitric oxide synthase, brain1.14.13.390.680
3nnzH4BNitric oxide synthase, brain1.14.13.390.674
3nlnH4BNitric oxide synthase, brain1.14.13.390.672
4cx3H4BNitric oxide synthase, brain1.14.13.390.659
3ufuH4BNitric oxide synthase, brain1.14.13.390.657
1zzrH4BNitric oxide synthase, brain1.14.13.390.648
3b3oH4BNitric oxide synthase, brain1.14.13.390.648
1p6kH4BNitric oxide synthase, brain1.14.13.390.638
1om5H4BNitric oxide synthase, brain1.14.13.390.637
3nlvH4BNitric oxide synthase, brain1.14.13.390.637
4fvzH4BNitric oxide synthase, brain1.14.13.390.635
3ufqH4BNitric oxide synthase, brain1.14.13.390.630
3nljH4BNitric oxide synthase, brain1.14.13.390.627
3b3nH4BNitric oxide synthase, brain1.14.13.390.624
3b3pH4BNitric oxide synthase, brain1.14.13.390.621
3jx2JI4Nitric oxide synthase, brain1.14.13.390.619
4jsgH4BNitric oxide synthase, brain1.14.13.390.618
3jwtH4BNitric oxide synthase, brain1.14.13.390.617
1rs7H4BNitric oxide synthase, brain1.14.13.390.615
4k5d1Q6Nitric oxide synthase, brain1.14.13.390.615
3jx4H4BNitric oxide synthase, brain1.14.13.390.612
5aglH4BNitric oxide synthase, brain1.14.13.390.612
3ufrH4BNitric oxide synthase, brain1.14.13.390.611
1m00H4BNitric oxide synthase, brain1.14.13.390.607
3n5vH4BNitric oxide synthase, brain1.14.13.390.607
4fw0H4BNitric oxide synthase, brain1.14.13.390.607
1k2uH4BNitric oxide synthase, brain1.14.13.390.606
3dqrH4BNitric oxide synthase, brain1.14.13.390.605
3pngH4BNitric oxide synthase, brain1.14.13.390.605
3tymH4BNitric oxide synthase, brain1.14.13.390.602
1rs6H4BNitric oxide synthase, brain1.14.13.390.601
4k5dH4BNitric oxide synthase, brain1.14.13.390.601
4luxH4BNitric oxide synthase, brain1.14.13.390.600
3jt5H4BNitric oxide synthase, brain1.14.13.390.594
3n5zH4BNitric oxide synthase, brain1.14.13.390.593
4k5eH4BNitric oxide synthase, brain1.14.13.390.589
1zzuH4BNitric oxide synthase, brain1.14.13.390.588
2g6iHBINitric oxide synthase, brain1.14.13.390.585
3pnfH4BNitric oxide synthase, brain1.14.13.390.585
1zzqH4BNitric oxide synthase, brain1.14.13.390.583
4fvxH4BNitric oxide synthase, brain1.14.13.390.583
3nlrH4BNitric oxide synthase, brain1.14.13.390.582
3b3mH4BNitric oxide synthase, brain1.14.13.390.581
3jx5J14Nitric oxide synthase, brain1.14.13.390.580
4jsiQ05Nitric oxide synthase, brain1.14.13.390.579
3ufoH4BNitric oxide synthase, brain1.14.13.390.576
3nlzH4BNitric oxide synthase, brain1.14.13.390.575
3jx3H4BNitric oxide synthase, brain1.14.13.390.574
3nnyH4BNitric oxide synthase, brain1.14.13.390.574
1k2tH4BNitric oxide synthase, brain1.14.13.390.573
3rqjH4BNitric oxide synthase, brain1.14.13.390.573
4imuH4BNitric oxide synthase, brain1.14.13.390.572
3rqmH4BNitric oxide synthase, brain1.14.13.390.569
3nlwH4BNitric oxide synthase, brain1.14.13.390.568
1p6jH4BNitric oxide synthase, brain1.14.13.390.566
3nlkH4BNitric oxide synthase, brain1.14.13.390.566
3jwuH4BNitric oxide synthase, brain1.14.13.390.565
4euxH4BNitric oxide synthase, brain1.14.13.390.562
3n62XFJNitric oxide synthase, brain1.14.13.390.559
3nlyH4BNitric oxide synthase, brain1.14.13.390.558
3nlqH4BNitric oxide synthase, brain1.14.13.390.557
5agkH4BNitric oxide synthase, brain1.14.13.390.556
4cx5H4BNitric oxide synthase, brain1.14.13.390.555
3jx0JI4Nitric oxide synthase, brain1.14.13.390.554
3ufpH4BNitric oxide synthase, brain1.14.13.390.553
2hx3H4BNitric oxide synthase, brain1.14.13.390.552
3ufvH4BNitric oxide synthase, brain1.14.13.390.552
4gqeH4BNitric oxide synthase, brain1.14.13.390.549
4k5gH4BNitric oxide synthase, brain1.14.13.390.548
3jt7H4BNitric oxide synthase, brain1.14.13.390.546
3jt9H4BNitric oxide synthase, brain1.14.13.390.546
4cx3HW8Nitric oxide synthase, brain1.14.13.390.546
4jsfH4BNitric oxide synthase, brain1.14.13.390.546
3pneH4BNitric oxide synthase, brain1.14.13.390.545
4imwH4BNitric oxide synthase, brain1.14.13.390.545
1mmvH4BNitric oxide synthase, brain1.14.13.390.544
3jx4J11Nitric oxide synthase, brain1.14.13.390.542
3jwvH4BNitric oxide synthase, brain1.14.13.390.541
4imtH4BNitric oxide synthase, brain1.14.13.390.541
3ufuHW8Nitric oxide synthase, brain1.14.13.390.540
3jx6H4BNitric oxide synthase, brain1.14.13.390.539
4cx4H4BNitric oxide synthase, brain1.14.13.390.539
3tylH4BNitric oxide synthase, brain1.14.13.390.538
4jseH4BNitric oxide synthase, brain1.14.13.390.537
4k5fH4BNitric oxide synthase, brain1.14.13.390.536
3nloH4BNitric oxide synthase, brain1.14.13.390.532
4jshH4BNitric oxide synthase, brain1.14.13.390.532
2g6j7APNitric oxide synthase, brain1.14.13.390.528
3q9aH4BNitric oxide synthase, brain1.14.13.390.528
3nlrJRSNitric oxide synthase, brain1.14.13.390.526
3n5wXFJNitric oxide synthase, brain1.14.13.390.525
3jt6H4BNitric oxide synthase, brain1.14.13.390.523
3svpJK5Nitric oxide synthase, brain1.14.13.390.520
3uftH4BNitric oxide synthase, brain1.14.13.390.520
3jt3H4BNitric oxide synthase, brain1.14.13.390.519
4jsgQ10Nitric oxide synthase, brain1.14.13.390.518
5agpH4BNitric oxide synthase, brain1.14.13.390.517
3nlnJRSNitric oxide synthase, brain1.14.13.390.516
3b3pJI7Nitric oxide synthase, brain1.14.13.390.514
3svqH4BNitric oxide synthase, brain1.14.13.390.514
3n61H4BNitric oxide synthase, brain1.14.13.390.513
3svpH4BNitric oxide synthase, brain1.14.13.390.513
3ufwH4BNitric oxide synthase, brain1.14.13.390.512
3n63XFNNitric oxide synthase, brain1.14.13.390.511
3rqkH4BNitric oxide synthase, brain1.14.13.390.511
4cx5HW8Nitric oxide synthase, brain1.14.13.390.511
3n66XFNNitric oxide synthase, brain1.14.13.390.509
3nljJRRNitric oxide synthase, brain1.14.13.390.509
3n60XFNNitric oxide synthase, brain1.14.13.390.508
3rqlH4BNitric oxide synthase, brain1.14.13.390.508
3tym08RNitric oxide synthase, brain1.14.13.390.508
3n5xXFKNitric oxide synthase, brain1.14.13.390.507
3ufsH4BNitric oxide synthase, brain1.14.13.390.506
3jwtJI5Nitric oxide synthase, brain1.14.13.390.505
3fc5H4BNitric oxide synthase, brain1.14.13.390.504
3q99H4BNitric oxide synthase, brain1.14.13.390.504
3nlv3XANitric oxide synthase, brain1.14.13.390.503
3n5vXFHNitric oxide synthase, brain1.14.13.390.501
1r35H4BNitric oxide synthase, inducible1.14.13.390.497
3n65XFJNitric oxide synthase, brain1.14.13.390.497
3nnz59WNitric oxide synthase, brain1.14.13.390.497
3jt4H4BNitric oxide synthase, brain1.14.13.390.495
4k5gQ13Nitric oxide synthase, brain1.14.13.390.495
1rs6DP2Nitric oxide synthase, brain1.14.13.390.493
4luxQJ8Nitric oxide synthase, brain1.14.13.390.493
3ej8H4BNitric oxide synthase, inducible1.14.13.390.492
3dwjH4BNitric oxide synthase, inducible1.14.13.390.487
3ufrH5WNitric oxide synthase, brain1.14.13.390.487
1zzrDP9Nitric oxide synthase, brain1.14.13.390.486
3jt8H4BNitric oxide synthase, brain1.14.13.390.484
3jwuJ11Nitric oxide synthase, brain1.14.13.390.484
3e7gH4BNitric oxide synthase, inducible1.14.13.390.483
1zzuDP1Nitric oxide synthase, brain1.14.13.390.481
3pnf8BXNitric oxide synthase, brain1.14.13.390.480
3e6tH4BNitric oxide synthase, inducible1.14.13.390.479
3rqmX2ENitric oxide synthase, brain1.14.13.390.479
3n5zXFMNitric oxide synthase, brain1.14.13.390.478
1zvlH4BNitric oxide synthase, brain1.14.13.390.477
3n5yXFLNitric oxide synthase, brain1.14.13.390.476
3nlkJSSNitric oxide synthase, brain1.14.13.390.476
4euxHW1Nitric oxide synthase, brain1.14.13.390.476
1zzqDP9Nitric oxide synthase, brain1.14.13.390.475
3nlqJRRNitric oxide synthase, brain1.14.13.390.472
4imw1EVNitric oxide synthase, brain1.14.13.390.472
3nosH4BNitric oxide synthase, endothelial1.14.13.390.471
3png8CXNitric oxide synthase, brain1.14.13.390.471
3jx6JI5Nitric oxide synthase, brain1.14.13.390.470
3jx3JI5Nitric oxide synthase, brain1.14.13.390.469
4jsjQJ7Nitric oxide synthase, brain1.14.13.390.468
4k5fQ14Nitric oxide synthase, brain1.14.13.390.468
3nloJSRNitric oxide synthase, brain1.14.13.390.467
3jwsJI4Nitric oxide synthase, brain1.14.13.390.466
1qomH4BNitric oxide synthase, inducible1.14.13.390.465
3nw2H4BNitric oxide synthase, inducible1.14.13.390.464
3ufvHW9Nitric oxide synthase, brain1.14.13.390.464
4jsfQJ4Nitric oxide synthase, brain1.14.13.390.464
3nlz3XDNitric oxide synthase, brain1.14.13.390.463
4cx4HW9Nitric oxide synthase, brain1.14.13.390.462
3nly3XCNitric oxide synthase, brain1.14.13.390.461
3nny59RNitric oxide synthase, brain1.14.13.390.461
3pne8AXNitric oxide synthase, brain1.14.13.390.461
3e67H4BNitric oxide synthase, inducible1.14.13.390.460
4imu1ETNitric oxide synthase, brain1.14.13.390.458
3e6oH4BNitric oxide synthase, inducible1.14.13.390.457
3b3oJI3Nitric oxide synthase, brain1.14.13.390.456
3rqjY2BNitric oxide synthase, brain1.14.13.390.456
1p6jDP9Nitric oxide synthase, brain1.14.13.390.455
3ufpH4WNitric oxide synthase, brain1.14.13.390.453
2nodH4BNitric oxide synthase, inducible1.14.13.390.451
3ufwHW0Nitric oxide synthase, brain1.14.13.390.451
1m8eH4BNitric oxide synthase, inducible1.14.13.390.449
4k5e1Q7Nitric oxide synthase, brain1.14.13.390.449
3hsnH4BNitric oxide synthase, brain1.14.13.390.446
4imt1EWNitric oxide synthase, brain1.14.13.390.440