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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.708
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.666
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.649
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.648
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.640
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.630
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.629
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.629
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.627
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.618
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.613
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.605
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.604
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.604
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.601
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.601
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.596
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.595
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.584
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.580
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.573
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.571
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.567
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.566
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.550
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.530
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.523
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.519
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.515
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.508
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.486
3adaNADSubunit alpha of sarocosine oxidase/0.447
2g8yNADHydroxycarboxylate dehydrogenase B/0.442
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.442
1k7fIAVTryptophan synthase alpha chain/0.441
3b9lAZZSerum albumin/0.440
3k1wBFXRenin3.4.23.150.440