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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.733
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.566
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.546
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.546
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.545
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.543
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.542
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.541
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.538
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.534
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.526
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.522
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.513
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.509
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.508
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.505
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.498
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.485
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.483
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.480
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.476
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.474
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.470
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.466
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.465
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.456
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.452
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.444
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.440