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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n8yDIFProstaglandin G/H synthase 11.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3n8yDIFProstaglandin G/H synthase 11.14.99.11.000
3n8wFLPProstaglandin G/H synthase 11.14.99.10.649
1ht834CProstaglandin G/H synthase 11.14.99.10.613
1q4gBFLProstaglandin G/H synthase 11.14.99.10.604
1eqhFLPProstaglandin G/H synthase 11.14.99.10.588
1eqgIBPProstaglandin G/H synthase 11.14.99.10.584
2aylFLPProstaglandin G/H synthase 11.14.99.10.580
2oyuIMSProstaglandin G/H synthase 11.14.99.10.577
3rr3FLRProstaglandin G/H synthase 21.14.99.10.571
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.570
3n8xNIMProstaglandin G/H synthase 11.14.99.10.567
3n8zFLPProstaglandin G/H synthase 11.14.99.10.566
5ikrID8Prostaglandin G/H synthase 21.14.99.10.563
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.558
4otyLURProstaglandin G/H synthase 21.14.99.10.553
4coxIMNProstaglandin G/H synthase 21.14.99.10.550
3q7dNPXProstaglandin G/H synthase 21.14.99.10.542
4ph9IBPProstaglandin G/H synthase 21.14.99.10.531
3kk6CELProstaglandin G/H synthase 11.14.99.10.528
3ntgD72Prostaglandin G/H synthase 21.14.99.10.524
4rrxLURProstaglandin G/H synthase 21.14.99.10.523
3pghFLPProstaglandin G/H synthase 21.14.99.10.520
4m10ICDProstaglandin G/H synthase 21.14.99.10.517
3mqe416Prostaglandin G/H synthase 21.14.99.10.500
3ln1CELProstaglandin G/H synthase 21.14.99.10.497
2npaMMBPeroxisome proliferator-activated receptor alpha/0.441