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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n5vH4BNitric oxide synthase, brain1.14.13.39

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3n5vH4BNitric oxide synthase, brain1.14.13.391.000
3n5vXFHNitric oxide synthase, brain1.14.13.390.726
3tylH4BNitric oxide synthase, brain1.14.13.390.691
4fw0H4BNitric oxide synthase, brain1.14.13.390.685
3nlnH4BNitric oxide synthase, brain1.14.13.390.676
3jwvH4BNitric oxide synthase, brain1.14.13.390.675
3jx3H4BNitric oxide synthase, brain1.14.13.390.674
3pngH4BNitric oxide synthase, brain1.14.13.390.665
3n5yH4BNitric oxide synthase, brain1.14.13.390.664
3jwtH4BNitric oxide synthase, brain1.14.13.390.663
4imtH4BNitric oxide synthase, brain1.14.13.390.658
3nlvH4BNitric oxide synthase, brain1.14.13.390.657
3jt8H4BNitric oxide synthase, brain1.14.13.390.656
4fvzH4BNitric oxide synthase, brain1.14.13.390.650
3jx4H4BNitric oxide synthase, brain1.14.13.390.644
3nlpH4BNitric oxide synthase, brain1.14.13.390.642
3jt5H4BNitric oxide synthase, brain1.14.13.390.640
3jx5H4BNitric oxide synthase, brain1.14.13.390.635
3b3oH4BNitric oxide synthase, brain1.14.13.390.634
1zzrH4BNitric oxide synthase, brain1.14.13.390.632
3nlzH4BNitric oxide synthase, brain1.14.13.390.626
4luxH4BNitric oxide synthase, brain1.14.13.390.626
3jt9H4BNitric oxide synthase, brain1.14.13.390.621
3ufqH4BNitric oxide synthase, brain1.14.13.390.621
4fvyH4BNitric oxide synthase, brain1.14.13.390.618
1p6kH4BNitric oxide synthase, brain1.14.13.390.613
1k2tH4BNitric oxide synthase, brain1.14.13.390.611
1k2uH4BNitric oxide synthase, brain1.14.13.390.609
3ufrH4BNitric oxide synthase, brain1.14.13.390.609
4k5eH4BNitric oxide synthase, brain1.14.13.390.608
5aglH4BNitric oxide synthase, brain1.14.13.390.606
1zzqH4BNitric oxide synthase, brain1.14.13.390.602
1zzuH4BNitric oxide synthase, brain1.14.13.390.602
3nnzH4BNitric oxide synthase, brain1.14.13.390.601
4jsgH4BNitric oxide synthase, brain1.14.13.390.601
3ufoH4BNitric oxide synthase, brain1.14.13.390.599
3rqjH4BNitric oxide synthase, brain1.14.13.390.596
2g6iHBINitric oxide synthase, brain1.14.13.390.595
4k5dH4BNitric oxide synthase, brain1.14.13.390.588
3n5zH4BNitric oxide synthase, brain1.14.13.390.587
3nnyH4BNitric oxide synthase, brain1.14.13.390.586
3rqmH4BNitric oxide synthase, brain1.14.13.390.586
4imuH4BNitric oxide synthase, brain1.14.13.390.584
4jsiH4BNitric oxide synthase, brain1.14.13.390.584
3pnfH4BNitric oxide synthase, brain1.14.13.390.583
3ufpH4BNitric oxide synthase, brain1.14.13.390.582
4imwH4BNitric oxide synthase, brain1.14.13.390.579
3b3nH4BNitric oxide synthase, brain1.14.13.390.577
2hx4H4BNitric oxide synthase, brain1.14.13.390.576
3jx2H4BNitric oxide synthase, brain1.14.13.390.576
3n62XFJNitric oxide synthase, brain1.14.13.390.575
3jwuH4BNitric oxide synthase, brain1.14.13.390.573
3fc5H4BNitric oxide synthase, brain1.14.13.390.572
3jt7H4BNitric oxide synthase, brain1.14.13.390.571
3tymH4BNitric oxide synthase, brain1.14.13.390.570
5agkH4BNitric oxide synthase, brain1.14.13.390.570
1om5H4BNitric oxide synthase, brain1.14.13.390.566
3nlnJRSNitric oxide synthase, brain1.14.13.390.565
2hx3H4BNitric oxide synthase, brain1.14.13.390.564
3nlrH4BNitric oxide synthase, brain1.14.13.390.564
3nlw3XFNitric oxide synthase, brain1.14.13.390.564
4k5fH4BNitric oxide synthase, brain1.14.13.390.564
3nlkH4BNitric oxide synthase, brain1.14.13.390.563
4gqeH4BNitric oxide synthase, brain1.14.13.390.562
3b3pH4BNitric oxide synthase, brain1.14.13.390.560
3n5xXFKNitric oxide synthase, brain1.14.13.390.560
3nloH4BNitric oxide synthase, brain1.14.13.390.560
3nlqH4BNitric oxide synthase, brain1.14.13.390.560
4euxH4BNitric oxide synthase, brain1.14.13.390.559
3nlwH4BNitric oxide synthase, brain1.14.13.390.558
3pneH4BNitric oxide synthase, brain1.14.13.390.556
4jsfH4BNitric oxide synthase, brain1.14.13.390.556
3jx6H4BNitric oxide synthase, brain1.14.13.390.555
3tylAXWNitric oxide synthase, brain1.14.13.390.554
3nlv3XANitric oxide synthase, brain1.14.13.390.551
1m00H4BNitric oxide synthase, brain1.14.13.390.550
4cx5H4BNitric oxide synthase, brain1.14.13.390.550
3ufvH4BNitric oxide synthase, brain1.14.13.390.549
4jseH4BNitric oxide synthase, brain1.14.13.390.548
4k5gH4BNitric oxide synthase, brain1.14.13.390.548
1rs7H4BNitric oxide synthase, brain1.14.13.390.547
3jwtJI5Nitric oxide synthase, brain1.14.13.390.547
4fvxH4BNitric oxide synthase, brain1.14.13.390.547
4jshH4BNitric oxide synthase, brain1.14.13.390.546
3nlyH4BNitric oxide synthase, brain1.14.13.390.544
3svqH4BNitric oxide synthase, brain1.14.13.390.543
3jtaH4BNitric oxide synthase, brain1.14.13.390.539
3jwsJI4Nitric oxide synthase, brain1.14.13.390.539
3rqlH4BNitric oxide synthase, brain1.14.13.390.539
4cx4H4BNitric oxide synthase, brain1.14.13.390.538
3rqkH4BNitric oxide synthase, brain1.14.13.390.537
4cx3H4BNitric oxide synthase, brain1.14.13.390.537
1p6jH4BNitric oxide synthase, brain1.14.13.390.536
3jx6JI5Nitric oxide synthase, brain1.14.13.390.535
3jx5J14Nitric oxide synthase, brain1.14.13.390.534
3ufwH4BNitric oxide synthase, brain1.14.13.390.533
4k5d1Q6Nitric oxide synthase, brain1.14.13.390.533
4k5gQ13Nitric oxide synthase, brain1.14.13.390.532
5agpH4BNitric oxide synthase, brain1.14.13.390.531
3jt3H4BNitric oxide synthase, brain1.14.13.390.530
3png8CXNitric oxide synthase, brain1.14.13.390.530
2g6j7APNitric oxide synthase, brain1.14.13.390.528
3tym08RNitric oxide synthase, brain1.14.13.390.527
3jx0JI4Nitric oxide synthase, brain1.14.13.390.526
3ufqHW5Nitric oxide synthase, brain1.14.13.390.526
4luxQJ8Nitric oxide synthase, brain1.14.13.390.526
3svpH4BNitric oxide synthase, brain1.14.13.390.525
3uftH4BNitric oxide synthase, brain1.14.13.390.525
3ufoHW4Nitric oxide synthase, brain1.14.13.390.523
1rs6H4BNitric oxide synthase, brain1.14.13.390.522
3q9aH4BNitric oxide synthase, brain1.14.13.390.522
3n61H4BNitric oxide synthase, brain1.14.13.390.520
3ufsH4BNitric oxide synthase, brain1.14.13.390.520
3svpJK5Nitric oxide synthase, brain1.14.13.390.519
3jt6H4BNitric oxide synthase, brain1.14.13.390.518
3n63XFNNitric oxide synthase, brain1.14.13.390.516
3nlz3XDNitric oxide synthase, brain1.14.13.390.516
1r35H4BNitric oxide synthase, inducible1.14.13.390.515
3jt4H4BNitric oxide synthase, brain1.14.13.390.515
3dwjH4BNitric oxide synthase, inducible1.14.13.390.514
3ufuH4BNitric oxide synthase, brain1.14.13.390.514
3nlpJSSNitric oxide synthase, brain1.14.13.390.511
3n60XFNNitric oxide synthase, brain1.14.13.390.510
3b3mH4BNitric oxide synthase, brain1.14.13.390.509
3n5wXFJNitric oxide synthase, brain1.14.13.390.507
3n65XFJNitric oxide synthase, brain1.14.13.390.507
4imt1EWNitric oxide synthase, brain1.14.13.390.505
3hsnH4BNitric oxide synthase, brain1.14.13.390.502
2hx44HXNitric oxide synthase, brain1.14.13.390.501
1zzqDP9Nitric oxide synthase, brain1.14.13.390.500
1mmvH4BNitric oxide synthase, brain1.14.13.390.494
3nnz59WNitric oxide synthase, brain1.14.13.390.494
3rqlX2DNitric oxide synthase, brain1.14.13.390.493
3n66XFNNitric oxide synthase, brain1.14.13.390.492
3e7gH4BNitric oxide synthase, inducible1.14.13.390.491
3rqmX2ENitric oxide synthase, brain1.14.13.390.491
1zzuDP1Nitric oxide synthase, brain1.14.13.390.490
3jx2JI4Nitric oxide synthase, brain1.14.13.390.490
3jx4J11Nitric oxide synthase, brain1.14.13.390.489
4jsgQ10Nitric oxide synthase, brain1.14.13.390.488
3ej8H4BNitric oxide synthase, inducible1.14.13.390.487
3e6tH4BNitric oxide synthase, inducible1.14.13.390.486
1zzrDP9Nitric oxide synthase, brain1.14.13.390.485
3b3pJI7Nitric oxide synthase, brain1.14.13.390.485
3nlrJRSNitric oxide synthase, brain1.14.13.390.485
3n5yXFLNitric oxide synthase, brain1.14.13.390.484
3n5zXFMNitric oxide synthase, brain1.14.13.390.481
3b3oJI3Nitric oxide synthase, brain1.14.13.390.478
3e6oH4BNitric oxide synthase, inducible1.14.13.390.478
3jwuJ11Nitric oxide synthase, brain1.14.13.390.478
3nlkJSSNitric oxide synthase, brain1.14.13.390.478
3nloJSRNitric oxide synthase, brain1.14.13.390.478
3ufrH5WNitric oxide synthase, brain1.14.13.390.478
4d1oH4BNitric oxide synthase, endothelial1.14.13.390.478
1zvlH4BNitric oxide synthase, brain1.14.13.390.477
3pnf8BXNitric oxide synthase, brain1.14.13.390.476
4cx5HW8Nitric oxide synthase, brain1.14.13.390.476
4imw1EVNitric oxide synthase, brain1.14.13.390.476
1qomH4BNitric oxide synthase, inducible1.14.13.390.475
4euxHW1Nitric oxide synthase, brain1.14.13.390.474
3nosH4BNitric oxide synthase, endothelial1.14.13.390.473
3nlqJRRNitric oxide synthase, brain1.14.13.390.472
2nodH4BNitric oxide synthase, inducible1.14.13.390.470
3nljH4BNitric oxide synthase, brain1.14.13.390.469
3pne8AXNitric oxide synthase, brain1.14.13.390.469
4jsfQJ4Nitric oxide synthase, brain1.14.13.390.468
4jsiQ05Nitric oxide synthase, brain1.14.13.390.468
3ufpH4WNitric oxide synthase, brain1.14.13.390.467
3rqjY2BNitric oxide synthase, brain1.14.13.390.462
3e67H4BNitric oxide synthase, inducible1.14.13.390.461
3nny59RNitric oxide synthase, brain1.14.13.390.461
3nw2H4BNitric oxide synthase, inducible1.14.13.390.461
3ufwHW0Nitric oxide synthase, brain1.14.13.390.461
3nly3XCNitric oxide synthase, brain1.14.13.390.460
4k5fQ14Nitric oxide synthase, brain1.14.13.390.460
3jx3JI5Nitric oxide synthase, brain1.14.13.390.459
4imu1ETNitric oxide synthase, brain1.14.13.390.459
4cx3HW8Nitric oxide synthase, brain1.14.13.390.458
3ufvHW9Nitric oxide synthase, brain1.14.13.390.456
4jsjQJ7Nitric oxide synthase, brain1.14.13.390.456
4k5e1Q7Nitric oxide synthase, brain1.14.13.390.456
1m8eH4BNitric oxide synthase, inducible1.14.13.390.455
4cx4HW9Nitric oxide synthase, brain1.14.13.390.455
3svqJK4Nitric oxide synthase, brain1.14.13.390.447
1p6jDP9Nitric oxide synthase, brain1.14.13.390.446
3rqkX2CNitric oxide synthase, brain1.14.13.390.442