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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3med65BGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3med65BGag-Pol polyprotein2.7.7.491.000
3mec65BGag-Pol polyprotein2.7.7.490.643
3m8qDJZGag-Pol polyprotein2.7.7.490.556
2ze2T27Gag-Pol polyprotein2.7.7.490.515
3m8p65BGag-Pol polyprotein2.7.7.490.495
3nbpJGZGag-Pol polyprotein2.7.7.490.493
3megT27Gag-Pol polyprotein2.7.7.490.492
3ffi3OBGag-Pol polyprotein2.7.7.490.483
2rf2MRXGag-Pol polyprotein2.7.7.490.476
3i0rRT3Gag-Pol polyprotein2.7.7.490.476
2hnzPC0Gag-Pol polyprotein2.7.7.490.463
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.459
1ikxPNUGag-Pol polyprotein2.7.7.490.456
1c1bGCAGag-Pol polyprotein2.7.7.490.452
1ikvEFZGag-Pol polyprotein2.7.7.490.447
4i2q1BTGag-Pol polyprotein2.7.7.490.441