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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m0oFADMonomeric sarcosine oxidase1.5.3.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3m0oFADMonomeric sarcosine oxidase1.5.3.11.000
3m13FADMonomeric sarcosine oxidase1.5.3.10.639
3m12FADMonomeric sarcosine oxidase1.5.3.10.607
4u9vACON-alpha-acetyltransferase 402.3.10.459
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.444