sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3ldl	ATP	78 kDa glucose-regulated protein

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3ldl	ATP	78 kDa glucose-regulated protein	/	1.000
5f2r	ACP	78 kDa glucose-regulated protein	/	0.522
1ngh	ATP	Heat shock cognate 71 kDa protein	/	0.520
1ngi	ANP	Heat shock cognate 71 kDa protein	/	0.520
1atr	ADP	Heat shock cognate 71 kDa protein	/	0.499
1nge	ATP	Heat shock cognate 71 kDa protein	/	0.495
2qwq	ADP	Heat shock cognate 71 kDa protein	/	0.468
2qwr	ANP	Heat shock cognate 71 kDa protein	/	0.448
3hsc	ADP	Heat shock cognate 71 kDa protein	/	0.446
1ats	ADP	Heat shock cognate 71 kDa protein	/	0.443
5f1x	ATP	78 kDa glucose-regulated protein	/	0.441