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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lamKRPGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3lamKRPGag-Pol polyprotein2.7.7.491.000
3lanKBTGag-Pol polyprotein2.7.7.490.601
4i7fNVEGag-Pol polyprotein2.7.7.490.595
3is9AC7Gag-Pol polyprotein2.7.7.490.557
1c1bGCAGag-Pol polyprotein2.7.7.490.554
3ffi3OBGag-Pol polyprotein2.7.7.490.553
3irxUDRGag-Pol polyprotein2.7.7.490.552
3i0sRT7Gag-Pol polyprotein2.7.7.490.528
1hpzAAPGag-Pol polyprotein2.7.7.490.525
2ban357Gag-Pol polyprotein2.7.7.490.519
1jlaTNKGag-Pol polyprotein2.7.7.490.516
2ze2T27Gag-Pol polyprotein2.7.7.490.516
3lakKR1Gag-Pol polyprotein2.7.7.490.515
1s1vTNKGag-Pol polyprotein2.7.7.490.513
4i2q1BTGag-Pol polyprotein2.7.7.490.511
3m8qDJZGag-Pol polyprotein2.7.7.490.509
1hnvTBOGag-Pol polyprotein2.7.7.490.506
3dolGWIPol protein/0.503
3i0rRT3Gag-Pol polyprotein2.7.7.490.502
1tktH12Gag-Pol polyprotein2.7.7.490.501
3di6PDZGag-Pol polyprotein2.7.7.490.500
3dleGFAGag-Pol polyprotein2.7.7.490.500
3dmjGWEPol protein/0.498
1ep4S11Gag-Pol polyprotein2.7.7.490.497
1rt2TNKGag-Pol polyprotein2.7.7.490.495
1tvrTB9Gag-Pol polyprotein2.7.7.490.492
5cyqT27Gag-Pol polyprotein2.7.7.490.492
3nbpJGZGag-Pol polyprotein2.7.7.490.491
3dyaPZLGag-Pol polyprotein2.7.7.490.490
4lsl1YQGag-Pol polyprotein2.7.7.490.489
1rt1MKCGag-Pol polyprotein2.7.7.490.488
1hquHBYGag-Pol polyprotein2.7.7.490.482
3e01PZ2Gag-Pol polyprotein2.7.7.490.479
2be2R22Gag-Pol polyprotein2.7.7.490.477
3drrR8EGag-Pol polyprotein2.7.7.490.475
3tamM06Gag-Pol polyprotein2.7.7.490.473
1klmSPPGag-Pol polyprotein2.7.7.490.471
3t195MAGag-Pol polyprotein2.7.7.490.470
4h4o506Gag-Pol polyprotein2.7.7.490.470
1vruAAPGag-Pol polyprotein2.7.7.490.466
2jleI15Reverse transcriptase/RNaseH/0.464
3drpR8EGag-Pol polyprotein2.7.7.490.462
1tduDURThymidylate synthase/0.459
4mfb29TGag-Pol polyprotein2.7.7.490.459
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
2vg7NNIGag-Pol polyprotein2.7.7.490.458
1revTB9Gag-Pol polyprotein2.7.7.490.457
1rtiHEFGag-Pol polyprotein2.7.7.490.455
1s9eADBGag-Pol polyprotein2.7.7.490.454
1diuBDMDihydrofolate reductase1.5.1.30.451
1ikwEFZGag-Pol polyprotein2.7.7.490.451
1tl1H18Gag-Pol polyprotein2.7.7.490.451
2ic3HBYGag-Pol polyprotein2.7.7.490.450
1jlcFTCGag-Pol polyprotein2.7.7.490.448
4ig3T27Gag-Pol polyprotein2.7.7.490.448
1rt5UC2Gag-Pol polyprotein2.7.7.490.446
1tkzH16Gag-Pol polyprotein2.7.7.490.445
2hqpNDPDihydrofolate reductase1.5.1.30.444
3meeT27Gag-Pol polyprotein2.7.7.490.443
4kko1REGag-Pol polyprotein2.7.7.490.443
3m8p65BGag-Pol polyprotein2.7.7.490.441
3lqfNADGalactitol dehydrogenase/0.440
4ko0JLJGag-Pol polyprotein2.7.7.490.440