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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lalKRVGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3lalKRVGag-Pol polyprotein2.7.7.491.000
3c6uM22Gag-Pol polyprotein2.7.7.490.603
3t1a5MAGag-Pol polyprotein2.7.7.490.585
4h4m494Gag-Pol polyprotein2.7.7.490.570
4h4o506Gag-Pol polyprotein2.7.7.490.545
3lakKR1Gag-Pol polyprotein2.7.7.490.543
2wonZZEGag-Pol polyprotein2.7.7.490.541
4mfb29TGag-Pol polyprotein2.7.7.490.538
3t195MAGag-Pol polyprotein2.7.7.490.536
2be2R22Gag-Pol polyprotein2.7.7.490.532
2jleI15Reverse transcriptase/RNaseH/0.532
3dokGWJPol protein/0.526
4rw6494Gag-Pol polyprotein2.7.7.490.526
3is9AC7Gag-Pol polyprotein2.7.7.490.522
1c1bGCAGag-Pol polyprotein2.7.7.490.513
3c6tM14Gag-Pol polyprotein2.7.7.490.513
3dmjGWEPol protein/0.499
2ynhEURGag-Pol polyprotein2.7.7.490.498
2b5j3ACGag-Pol polyprotein2.7.7.490.494
4lsl1YQGag-Pol polyprotein2.7.7.490.490
3qlhT27Gag-Pol polyprotein2.7.7.490.486
3drpR8EGag-Pol polyprotein2.7.7.490.483
1rt1MKCGag-Pol polyprotein2.7.7.490.481
3lanKBTGag-Pol polyprotein2.7.7.490.480
4rw4494Gag-Pol polyprotein2.7.7.490.475
3tamM06Gag-Pol polyprotein2.7.7.490.471
1tktH12Gag-Pol polyprotein2.7.7.490.469
1jlcFTCGag-Pol polyprotein2.7.7.490.466
3nbpJGZGag-Pol polyprotein2.7.7.490.466
3dleGFAGag-Pol polyprotein2.7.7.490.464
3e01PZ2Gag-Pol polyprotein2.7.7.490.463
1rt2TNKGag-Pol polyprotein2.7.7.490.462
3dlgGWEGag-Pol polyprotein2.7.7.490.462
1klmSPPGag-Pol polyprotein2.7.7.490.459
4i2pG73Gag-Pol polyprotein2.7.7.490.459
1tl3H20Gag-Pol polyprotein2.7.7.490.450
4id5T27Gag-Pol polyprotein2.7.7.490.450
2zd1T27Gag-Pol polyprotein2.7.7.490.449
2opsHBQGag-Pol polyprotein2.7.7.490.446
4g1qT27Gag-Pol polyprotein2.7.7.490.445
1rt4UC1Gag-Pol polyprotein2.7.7.490.442