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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l9lL9LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3l9lL9LcAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.596
3l9nL9NcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.593
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.539
2jdvL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.526
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.518
4c36ZO9cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.518
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.508
4c34STUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.505
2ojf4PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.502
3zo1SIJcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.501
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.498
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.497
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.496
2vo6M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.485
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.484
1q8tY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.483
2vo0M03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.478
2vo7M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.469
1stcSTUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.466
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.462
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.460
3kkvB99cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.460
4bgg844Activin receptor type-12.7.11.300.456
2gnlH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.455
1q8wM77cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.452
2uvyGVIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
3cqwCQWRAC-alpha serine/threonine-protein kinase2.7.11.10.451
2gnfY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.449
2bilBI1Serine/threonine-protein kinase pim-12.7.11.10.448
3sayOFTGlycogen synthase kinase-3 beta2.7.11.260.446
4hyi1AOSerine/threonine-protein kinase Chk12.7.11.10.444
3dtcVINMitogen-activated protein kinase kinase kinase 92.7.11.250.442
3mtfA3FActivin receptor type-12.7.11.300.442
4dymIYZActivin receptor type-12.7.11.300.442
3u9n09HSerine/threonine-protein kinase Chk12.7.11.10.440