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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kr6UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3kr6UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/1.000
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.614
3lthUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.606
3kqjUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.590
3swqEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.583
2rl1UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.574
4r7uUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.574
2rl2UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.562
3vcyUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.562
3upkUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.560
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.559
1a2nTETUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.539
1q3gUDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.536
3issEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.529
2yvwEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.493
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.471