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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kpfFADPolyamine oxidase1.5.3.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3kpfFADPolyamine oxidase1.5.3.141.000
1h81FADPolyamine oxidase1.5.3.140.561
3cn8FADPolyamine oxidase FMS1/0.549
3cntFADPolyamine oxidase FMS1/0.539
1xpqFADPolyamine oxidase FMS1/0.529
3cndFADPolyamine oxidase FMS1/0.527
4echFADPolyamine oxidase FMS1/0.523
4fwjFADLysine-specific histone demethylase 1B10.508
3zdnFADMonoamine oxidase N1.4.3.40.504
5l3dFADLysine-specific histone demethylase 1A10.502
2yg7FADPutrescine oxidase/0.501
3k7tFAD6-hydroxy-L-nicotine oxidase/0.498
4guuFA9Lysine-specific histone demethylase 1B10.487
3rhaFDAPutrescine oxidase/0.485
2babFADPutative aminooxidase/0.481
4i58FADCyclohexylamine Oxidase/0.477
2ba9FADPutative aminooxidase/0.474
2jb1FADL-amino acid oxidase/0.470
2bacFADPutative aminooxidase/0.467
2yg4FADPutrescine oxidase/0.461
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.460
3kveFADL-amino-acid oxidase/0.454
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.452
2b9yFADPutative aminooxidase/0.448
3qj4FADRenalase/0.447
2b9xFADPutative aminooxidase/0.444
1h83FADPolyamine oxidase1.5.3.140.443
1tdoFADL-amino-acid oxidase1.4.3.20.441