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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kflME8Putative methionyl-tRNA synthetase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3kflME8Putative methionyl-tRNA synthetase/1.000
1gaxVAAValine--tRNA ligase6.1.1.90.478
1pfyMSPMethionine--tRNA ligase6.1.1.100.477
1pg0MODMethionine--tRNA ligase6.1.1.100.465
5eghPCEctonucleotide pyrophosphatase/phosphodiesterase family member 6/0.444