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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k3jF4CMitogen-activated protein kinase 14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3k3jF4CMitogen-activated protein kinase 14/1.000
3p79P79Mitogen-activated protein kinase 14/0.675
3p5kP5KMitogen-activated protein kinase 14/0.656
3hv71AUMitogen-activated protein kinase 14/0.643
2puuG2GMitogen-activated protein kinase 14/0.637
3p7bP7BMitogen-activated protein kinase 14/0.630
3nnxEDDMitogen-activated protein kinase 14/0.625
3o8uBMUMitogen-activated protein kinase 14/0.621
3gi3B10Mitogen-activated protein kinase 14/0.619
1kv1BMUMitogen-activated protein kinase 14/0.608
3uvr06FMitogen-activated protein kinase 14/0.605
3e9319BMitogen-activated protein kinase 14/0.601
3nnuEDBMitogen-activated protein kinase 14/0.591
4l8mF46Mitogen-activated protein kinase 14/0.554
4aa0AA0Mitogen-activated protein kinase 14/0.551
3hv4L51Mitogen-activated protein kinase 14/0.533
1wbvLI3Mitogen-activated protein kinase 14/0.532
3gcuR48Mitogen-activated protein kinase 14/0.532
3wzeBAXVascular endothelial growth factor receptor 22.7.10.10.527
3npcB96Mitogen-activated protein kinase 92.7.11.240.517
1wbnL09Mitogen-activated protein kinase 14/0.511
3p78P78Mitogen-activated protein kinase 14/0.508
3ugc046Tyrosine-protein kinase JAK2/0.502
4u0i0LIMast/stem cell growth factor receptor Kit2.7.10.10.497
3aidARQGag-Pol polyprotein3.4.23.160.490
3d83GK6Mitogen-activated protein kinase 14/0.490
1xl2189Gag-Pol polyprotein3.4.23.160.485
1zthADPRIO-type serine/threonine-protein kinase Rio12.7.11.10.483
1c70L75Protease/0.482
1hiiC20Gag-Pol polyprotein/0.482
1mrwK57Gag-Pol polyprotein3.4.23.160.482
3em6017Gag-Pol polyprotein3.4.23.160.482
3nnwEDDMitogen-activated protein kinase 14/0.480
1ebyBEBGag-Pol polyprotein3.4.23.160.479
5hi2BAXSerine/threonine-protein kinase B-raf2.7.11.10.479
2hs2017Protease/0.478
3qp0NI8Gag-Pol polyprotein3.4.23.160.477
3ogqAB1Pol polyprotein/0.476
2q641UNGag-Pol polyprotein3.4.23.160.475
2qd8065Gag-Pol polyprotein3.4.23.160.475
3nu9478Gag-Pol polyprotein3.4.23.160.475
1w82L10Mitogen-activated protein kinase 14/0.474
3ekx1UNGag-Pol polyprotein3.4.23.160.474
1c6x3INProtease/0.473
2bpxMK1Gag-Pol polyprotein3.4.23.160.473
1merDMQGag-Pol polyprotein3.4.23.160.472
2bpw1INGag-Pol polyprotein3.4.23.160.472
2pwcG3GGag-Pol polyprotein3.4.23.160.472
3sa9A68Protease/0.471
3bheBZNGag-Pol polyprotein3.4.23.160.470
3ekyDR7Gag-Pol polyprotein3.4.23.160.469
3v013V0Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.469
3el9DR7Gag-Pol polyprotein3.4.23.160.468
1ec3MS3Gag-Pol polyprotein3.4.23.160.467
2b52D42Cyclin-dependent kinase 22.7.11.220.467
1hosPHPGag-Pol polyprotein/0.466
1hvlA76Gag-Pol polyprotein/0.466
1z1rHBHGag-Pol polyprotein3.4.23.160.466
2qnnQN1Gag-Pol polyprotein3.4.23.160.466
3d1xROCGag-Pol polyprotein3.4.23.160.466
3o9hK2EGag-Pol polyprotein/0.466
3zpuM8BGag-Pol polyprotein3.4.23.160.466
2bfyH1NAurora kinase B-A2.7.11.10.465
2bpv1INGag-Pol polyprotein3.4.23.160.465
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.465
3el51UNGag-Pol polyprotein/0.465
3t3c017Gag-Pol polyprotein3.4.23.160.465
1bai0Q4Gag-Pro polyprotein/0.464
1ohr1UNV-1 PROTEASE protein/0.464
1z1hHBBGag-Pol polyprotein3.4.23.160.464
2aidTHKGag-Pol polyprotein3.4.23.160.464
3n0tOPYDipeptidyl peptidase 23.4.14.20.464
3o9aK14Pol polyprotein/0.464
3s54017Protease/0.464
4dqh017Gag-Pol polyprotein/0.464
1dmpDMQGag-Pol polyprotein3.4.23.160.463
1mrxK57Gag-Pol polyprotein3.4.23.160.463
2bpz3INGag-Pol polyprotein3.4.23.160.463
3kkvB99cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
3livE16Protease/0.463
1hxwRITGag-Pol polyprotein/0.462
2avsMK1Gag-Pol polyprotein3.4.23.160.462
2qnpQN2Gag-Pol polyprotein3.4.23.160.462
2r43G3GGag-Pol polyprotein3.4.23.160.462
4j5j478Gag-Pol polyprotein3.4.23.160.462
1b6kPI5Gag-Pol polyprotein3.4.23.160.461
2uy0HV1Gag-Pol polyprotein3.4.23.160.461
2xbjXBJSerine/threonine-protein kinase Chk22.7.11.10.461
3djkG55Gag-Pol polyprotein3.4.23.160.461
4njt017Protease/0.461
4oauADP2-5A-dependent ribonuclease3.1.260.461
1ebwBEIGag-Pol polyprotein3.4.23.160.460
1hvsA77Gag-Pol polyprotein/0.460
1hwr216Gag-Pol polyprotein3.4.23.160.460
3el1DR7Gag-Pol polyprotein3.4.23.160.460
3el4ROCGag-Pol polyprotein3.4.23.160.460
1jstATPCyclin-dependent kinase 22.7.11.220.459
1sduMK1Gag-Pol polyprotein3.4.23.160.459
2bpy3INGag-Pol polyprotein3.4.23.160.459
2pd7FADVivid PAS protein VVD/0.459
2q55MU0Protease/0.459
2r38G4GGag-Pol polyprotein3.4.23.160.459
3kddJZQGag-Pol polyprotein3.4.23.160.459
3nwxKVSGag-Pol polyprotein3.4.23.160.459
3vfa031Gag-Pol polyprotein3.4.23.160.459
1sh9RITGag-Pol polyprotein3.4.23.160.458
2i4xKGQProtease/0.458
2qd7065Gag-Pol polyprotein3.4.23.160.458
3kfs3TLGag-Pol polyprotein/0.458
3pwrROCGag-Pol polyprotein3.4.23.160.458
3qn8NI7Gag-Pol polyprotein3.4.23.160.458
4q1x017Gag-Pol polyprotein3.4.23.160.458
1k6cMK1Gag-Pol polyprotein3.4.23.160.457
1w5xBE5Gag-Pol polyprotein3.4.23.160.457
2f3kRO1Protease/0.457
3i7eDJRGag-Pol polyprotein/0.457
3qk0QK0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.457
4an35Y0Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.457
4dqc017Gag-Pol polyprotein/0.457
4k4p3TLGag-Pol polyprotein/0.457
1ebzBECGag-Pol polyprotein3.4.23.160.456
1kzkJE2Gag-Pol polyprotein3.4.23.160.456
2brhDFWSerine/threonine-protein kinase Chk12.7.11.10.456
2hz0GINTyrosine-protein kinase ABL12.7.10.20.456
2qi5MZ7Gag-Pol polyprotein/0.456
2r3wG3GGag-Pol polyprotein3.4.23.160.456
3o8pBMUMitogen-activated protein kinase 14/0.456
3orzBI43-phosphoinositide-dependent protein kinase 12.7.11.10.456
1mesDMPGag-Pol polyprotein3.4.23.160.455
2b7zMK1Gag-Pol polyprotein/0.455
2hxq373Serine/threonine-protein kinase Chk12.7.11.10.455
2q631UNGag-Pol polyprotein3.4.23.160.455
2r5q1UNGag-Pol polyprotein/0.455
3ibqATPPyridoxal kinase/0.455
3nu6478Gag-Pol polyprotein3.4.23.160.455
3nuuJOZ3-phosphoinositide-dependent protein kinase 12.7.11.10.455
3nxe2NCProtease/0.455
3o9dK19Pol polyprotein/0.455
1d4yTPVGag-Pol polyprotein3.4.23.160.454
1ivq0PXGag-Pol polyprotein/0.454
1sbgIM1Gag-Pol polyprotein/0.454
1t7j478Gag-Pol polyprotein3.4.23.160.454
2hiw7MPTyrosine-protein kinase ABL12.7.10.20.454
2qhyMZ1Gag-Pol polyprotein/0.454
3cyxROCGag-Pol polyprotein3.4.23.160.454
3jvwDMPGag-Pol polyprotein3.4.23.160.454
1b6pPI7Gag-Pol polyprotein3.4.23.160.453
1d4hBEHGag-Pol polyprotein3.4.23.160.453
1hvkA79Gag-Pol polyprotein/0.453
1u54ACPActivated CDC42 kinase 1/0.453
2f80017Gag-Pol polyprotein3.4.23.160.453
2q5kAB1Protease/0.453
2qi3MZ5Gag-Pol polyprotein/0.453
3qbfJHGGag-Pol polyprotein3.4.23.160.453
4g170VNCasein kinase I isoform gamma-32.7.11.10.453
4s34ANPMitogen-activated protein kinase 12.7.11.240.453
1msnJE2Gag-Pol polyprotein3.4.23.160.452
1tcxIM1Gag-Pol polyprotein3.4.23.160.452
1wbk568Pol protein/0.452
2b9fADPMitogen-activated protein kinase FUS32.7.11.240.452
2hxl422Serine/threonine-protein kinase Chk12.7.11.10.452
2ieo017Protease/0.452
2qhzMZ2Gag-Pol polyprotein/0.452
2uxzHI1Gag-Pol polyprotein3.4.23.160.452
2yiwYIWMitogen-activated protein kinase 14/0.452
3oxv478Gag-Pol polyprotein3.4.23.160.452
3zhrTPPMultifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.452
4dqb017Gag-Pol polyprotein/0.452
1hsgMK1Gag-Pol polyprotein/0.451
1uu7BI23-phosphoinositide-dependent protein kinase 12.7.11.10.451
1zp9ATPRIO-type serine/threonine-protein kinase Rio12.7.11.10.451
2f8g017Gag-Pol polyprotein3.4.23.160.451
2fdd385Pol protein/0.451
2i5bADPPyridoxine kinase/0.451
2qhcAB1Protease/0.451
3nduROCGag-Pol polyprotein3.4.23.160.451
3ufnROCGag-Pol polyprotein/0.451
4em9TCEPeroxisome proliferator-activated receptor gamma/0.451
4ft3H1KSerine/threonine-protein kinase Chk12.7.11.10.451
1e1lFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.450
1ivp1ZKGag-Pol polyprotein/0.450
1k6tXN1Gag-Pol polyprotein3.4.23.160.450
2b9jADPMitogen-activated protein kinase FUS32.7.11.240.450
3d20017Gag-Pol polyprotein3.4.23.160.450
3epoMP5Phosphomethylpyrimidine synthase/0.450
3mws017Pol protein/0.450
3mxdK53Gag-Pol polyprotein3.4.23.160.450
3qihFG7Gag-Pol polyprotein3.4.23.160.450
3vid4TTVascular endothelial growth factor receptor 22.7.10.10.450
1c6yMK1Protease/0.449
1idb0DOGag-Pol polyprotein/0.449
1k6pXN3Gag-Pol polyprotein3.4.23.160.449
1nzdUPGDNA beta-glucosyltransferase/0.449
1qbsDMPGag-Pol polyprotein3.4.23.160.449
2acwUPGGlycosyltransferase/0.449
2cgw3C3Serine/threonine-protein kinase Chk12.7.11.10.449
2fxdDR7Pol polyprotein/0.449
2w1fL0FAurora kinase A2.7.11.10.449
3gi6D78Gag-Pol polyprotein/0.449
3o9gF53Gag-Pol polyprotein/0.449
4ii5ADPCyclin-dependent kinase 22.7.11.220.449
9hvp0E9Gag-Pol polyprotein/0.449
1ida0POGag-Pol polyprotein3.4.23.470.448
1metDMPGag-Pol polyprotein3.4.23.160.448
1nzfUPGDNA beta-glucosyltransferase/0.448
1w5vBE3Gag-Pol polyprotein3.4.23.160.448
2nnpROCProtease/0.448
3fx5KNIGag-Pol polyprotein3.4.23.160.448
3o9iA61Gag-Pol polyprotein/0.448
3upjU03Gag-Pol polyprotein/0.448
3zptM8YGag-Pol polyprotein3.4.23.160.448
4a6cQG9Gag-Pol polyprotein3.4.23.160.448
4qgiROCGag-Pol polyprotein3.4.23.160.448
1a8g2Z4Gag-Pol polyprotein3.4.23.160.447
1bdqIM1Gag-Pol polyprotein3.4.23.160.447
1bv7XV6Gag-Pol polyprotein3.4.23.160.447
1iziQ50Gag-Pol polyprotein3.4.23.160.447
1j39UPGDNA beta-glucosyltransferase/0.447
2cgu3A3Serine/threonine-protein kinase Chk12.7.11.10.447
2hc0AB2Protease/0.447
2i4vDJRV-1 protease/0.447
2pwrG4GGag-Pol polyprotein3.4.23.160.447
3gu7ADPDeath-associated protein kinase 12.7.11.10.447
3litE15Protease/0.447
4fhj0TZPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.447
4oavACP2-5A-dependent ribonuclease3.1.260.447
1ajxAH1Gag-Pol polyprotein3.4.23.160.446
1dw60Q4Gag-Pol polyprotein3.4.23.160.446
1hpv478Gag-Pol polyprotein/0.446
1hvjA78Gag-Pol polyprotein/0.446
1jf7TBHTyrosine-protein phosphatase non-receptor type 13.1.3.480.446
1k2c0Q4Gag-Pol polyprotein3.4.23.160.446
1npa3NHGag-Pol polyprotein3.4.23.160.446
1npwLGZGag-Pol polyprotein3.4.23.160.446
1qbt146Gag-Pol polyprotein3.4.23.160.446
1t3r017Gag-Pol polyprotein3.4.23.160.446
1wbmBLLPol protein/0.446
2fxeDR7Gag-Pol polyprotein3.4.23.160.446
2jkoBIJFocal adhesion kinase 12.7.10.20.446
2pyn1UNGag-Pol polyprotein3.4.23.160.446
2qi1MZ4Gag-Pol polyprotein/0.446
2qi6MZ8Gag-Pol polyprotein/0.446
3ambVX6cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
3d7tSTUTyrosine-protein kinase CSK/0.446
3ggu017Gag-Pol polyprotein3.4.23.160.446
3lzv017Gag-Pol polyprotein3.4.23.160.446
3oxw017Gag-Pol polyprotein3.4.23.160.446
3t113T1Gag-Pol polyprotein3.4.23.160.446
3tl9ROCGag-Pol polyprotein3.4.23.160.446
4an92P7Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.446
4bdcODHSerine/threonine-protein kinase Chk22.7.11.10.446
4q1y017Gag-Pol polyprotein3.4.23.160.446
4tuvCPZCytochrome P450 1191.140.446
1daz0Q4Gag-Pol polyprotein3.4.23.160.445
1hviA77Protease/0.445
1npvL27Gag-Pol polyprotein3.4.23.160.445
1t7i017Gag-Pol polyprotein3.4.23.160.445
2b55D31Cyclin-dependent kinase 22.7.11.220.445
2qi4MZ6Gag-Pol polyprotein/0.445
2r3jSCJCyclin-dependent kinase 22.7.11.220.445
2xyfG40Gag-Pol polyprotein/0.445
2yee2ECHeat shock protein HSP 90-alpha/0.445
3gstGPRGlutathione S-transferase Mu 12.5.1.180.445
3lq5SLQCyclin-dependent kinase 92.7.11.220.445
3o99K13Pol polyprotein/0.445
4dit0KDGlycogen synthase kinase-3 beta2.7.11.260.445
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
4gg50J3Hepatocyte growth factor receptor2.7.10.10.445
4jrnANPRhoptry kinase family protein/0.445
4l7sG7KTyrosine-protein kinase ITK/TSK2.7.10.20.445
1d4jMSCGag-Pol polyprotein3.4.23.160.444
1jld0PPGag-Pol polyprotein/0.444
1u3dFADCryptochrome-1/0.444
1wvySTUDeath-associated protein kinase 12.7.11.10.444
2vgoAD5Aurora kinase B-A2.7.11.10.444
3ndxRITGag-Pol polyprotein3.4.23.160.444
3nu3478Gag-Pol polyprotein3.4.23.160.444
3vf5031Gag-Pol polyprotein3.4.23.160.444
4bkz1WSMaternal embryonic leucine zipper kinase2.7.11.10.444
4dqe017Gag-Pol polyprotein/0.444
4ezj0SCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4fv1EK4Mitogen-activated protein kinase 12.7.11.240.444
4wboANWRhodopsin kinase/0.444
1bdrIM1Gag-Pol polyprotein3.4.23.160.443
1difA85Gag-Pol polyprotein/0.443
1ikvEFZGag-Pol polyprotein2.7.7.490.443
1ir3ANPInsulin receptor2.7.10.10.443
1jm6ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.443
1qbrXV6Gag-Pol polyprotein3.4.23.160.443
2b00GCHPhospholipase A2, major isoenzyme3.1.1.40.443
2pmdGNPTranslation initiation factor 2 subunit gamma/0.443
2psvMUVProtease/0.443
2q3kMUWGag-Pol polyprotein/0.443
2rhrEMOPutative ketoacyl reductase1.3.10.443
2xyeCXGGag-Pol polyprotein/0.443
3ekv478Gag-Pol polyprotein3.4.23.160.443
3lfnA27Cyclin-dependent kinase 22.7.11.220.443
3mtlFEFCyclin-dependent kinase 162.7.11.220.443
3oxcROCProtease/0.443
3oxxDR7Gag-Pol polyprotein3.4.23.160.443
3oy4017Gag-Pol polyprotein3.4.23.160.443
3qihNI7Gag-Pol polyprotein3.4.23.160.443
3sheI85MAP kinase-activated protein kinase 32.7.11.10.443
3tkh07SSerine/threonine-protein kinase Chk12.7.11.10.443
4a6bQG8Gag-Pol polyprotein3.4.23.160.443
4ei7GDPPlasmid replication protein RepX/0.443
4s32ANPMitogen-activated protein kinase 12.7.11.240.443
1hvrXK2Gag-Pol polyprotein/0.442
1k2b0Q4Gag-Pol polyprotein3.4.23.160.442
2a4fAAUV-1 protease/0.442
2gstGPSGlutathione S-transferase Mu 12.5.1.180.442
2jn3JN3Fatty acid-binding protein, liver/0.442
2p2h994Vascular endothelial growth factor receptor 22.7.10.10.442
3d1z017Gag-Pol polyprotein3.4.23.160.442
3gi4K60Gag-Pol polyprotein/0.442
3lfqA28Cyclin-dependent kinase 22.7.11.220.442
3ucb017Gag-Pol polyprotein/0.442
4ysjADPCalmodulin-like domain protein kinase/0.442
1bwaXV6Gag-Pol polyprotein3.4.23.160.441
1d4kPI8Gag-Pol polyprotein3.4.23.160.441
1yt9OISGag-Pol polyprotein/0.441
2idw017Protease/0.441
2izrBRKCasein kinase I isoform gamma-32.7.11.10.441
2qqfA1RNAD-dependent protein deacetylase HST23.5.10.441
2r5pMK1Gag-Pol polyprotein/0.441
3a7hATPSerine/threonine-protein kinase 242.7.11.10.441
3bfb9ODPheromone-binding protein ASP1/0.441
3bxsDRSGag-Pol polyprotein3.4.23.160.441
3kf03TLGag-Pol polyprotein/0.441
3kfr3TLGag-Pol polyprotein/0.441
3o9cK20Pol polyprotein/0.441
3oroAGSSerine/threonine protein kinase/0.441
3pe6ZYHMonoglyceride lipase/0.441
3qaaG04Gag-Pol polyprotein3.4.23.160.441
4djqM86Pol polyprotein/0.441
4fsrHKCSerine/threonine-protein kinase Chk12.7.11.10.441
4fv9E71Mitogen-activated protein kinase 12.7.11.240.441
1kqwRTLCellular retinol-binding protein type II/0.440
1proA88Gag-Pol polyprotein/0.440
1q97ATPSerine/threonine-protein kinase SKY12.7.11.10.440
1u59STUTyrosine-protein kinase ZAP-702.7.10.20.440
2b9iADPMitogen-activated protein kinase FUS32.7.11.240.440
2nmyROCProtease/0.440
2pmoHMDProtein kinase 7/0.440
2pym1UNGag-Pol polyprotein3.4.23.160.440
2qnqQN3Gag-Pol polyprotein3.4.23.160.440
3b8r887Vascular endothelial growth factor receptor 22.7.10.10.440
3eljGS7Mitogen-activated protein kinase 82.7.11.240.440
3em4DR7Gag-Pol polyprotein3.4.23.160.440
3kfn3TLGag-Pol polyprotein/0.440
3mdvCL6Cholesterol 24-hydroxylase/0.440
3nwq2NCGag-Pol polyprotein3.4.23.160.440
3r71X86Cyclin-dependent kinase 22.7.11.220.440
4enxZ20Serine/threonine-protein kinase pim-12.7.11.10.440
4hle17VPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.440
4k110J9Proto-oncogene tyrosine-protein kinase Src2.7.10.20.440