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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k2fNKXCarbonic anhydrase 24.2.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3k2fNKXCarbonic anhydrase 24.2.1.11.000
2h15B19Carbonic anhydrase 24.2.1.10.826
2eu3FF3Carbonic anhydrase 24.2.1.10.779
3dazMZMCarbonic anhydrase 24.2.1.10.772
1a42BZUCarbonic anhydrase 24.2.1.10.765
1bnnAL1Carbonic anhydrase 24.2.1.10.765
3eft3BSCarbonic anhydrase 24.2.1.10.762
3d9zD9ZCarbonic anhydrase 24.2.1.10.746
1g1dFSBCarbonic anhydrase 24.2.1.10.745
1bn4AL9Carbonic anhydrase 24.2.1.10.741
3b4fTUOCarbonic anhydrase 24.2.1.10.741
1zsbAZMCarbonic anhydrase 24.2.1.10.738
1bn1AL5Carbonic anhydrase 24.2.1.10.735
1kwrSG2Carbonic anhydrase 24.2.1.10.735
1if4FBSCarbonic anhydrase 24.2.1.10.725
3sbhE65Carbonic anhydrase 24.2.1.10.723
1bnwTPDCarbonic anhydrase 24.2.1.10.719
1i90INMCarbonic anhydrase 24.2.1.10.711
1i91INQCarbonic anhydrase 24.2.1.10.709
2wehFB1Carbonic anhydrase 24.2.1.10.709
4itoMPXCarbonic anhydrase 24.2.1.10.708
1g52F2BCarbonic anhydrase 24.2.1.10.706
1i9mINWCarbonic anhydrase 24.2.1.10.704
1i9nIOACarbonic anhydrase 24.2.1.10.704
3m5eJDRCarbonic anhydrase 24.2.1.10.701
3m2nJ74Carbonic anhydrase 24.2.1.10.699
3mhoJ43Carbonic anhydrase 24.2.1.10.698
3ffpLC1Carbonic anhydrase 24.2.1.10.696
3dd82C7Carbonic anhydrase 24.2.1.10.693
4kniE1ECarbonic anhydrase 24.2.1.10.693
1bntAL2Carbonic anhydrase 24.2.1.10.691
1if6FBUCarbonic anhydrase 24.2.1.10.686
3d8wD8WCarbonic anhydrase 24.2.1.10.685
3ni5C1HCarbonic anhydrase 24.2.1.10.683
1g4jFFBCarbonic anhydrase 24.2.1.10.679
4iwz1GOCarbonic anhydrase 24.2.1.10.674
1cilETSCarbonic anhydrase 24.2.1.10.673
3dc3AZMCarbonic anhydrase 24.2.1.10.671
3ml2SU0Carbonic anhydrase 24.2.1.10.670
4itp1GDCarbonic anhydrase 24.2.1.10.669
3qykIE2Carbonic anhydrase 24.2.1.10.667
3m98E02Carbonic anhydrase 24.2.1.10.664
1bnvAL7Carbonic anhydrase 24.2.1.10.662
3n3jWWVCarbonic anhydrase 24.2.1.10.661
1ttm667Carbonic anhydrase 24.2.1.10.658
3dcsMZMCarbonic anhydrase 24.2.1.10.658
3hkuTORCarbonic anhydrase 24.2.1.10.657
4ilx1EZCarbonic anhydrase 24.2.1.10.655
1bnuAL3Carbonic anhydrase 24.2.1.10.653
2wejFB2Carbonic anhydrase 24.2.1.10.653
3mmfD9HCarbonic anhydrase 24.2.1.10.653
2h4nAZMCarbonic anhydrase 24.2.1.10.649
3s8xE59Carbonic anhydrase 24.2.1.10.649
3betCTFCarbonic anhydrase 24.2.1.10.648
1bnmAL8Carbonic anhydrase 24.2.1.10.647
1i8zINLCarbonic anhydrase 24.2.1.10.646
3oikWZBCarbonic anhydrase 24.2.1.10.646
4bf6X0QCarbonic anhydrase 24.2.1.10.646
4mo82VQCarbonic anhydrase 24.2.1.10.646
3mhlJ71Carbonic anhydrase 24.2.1.10.644
1bnqAL4Carbonic anhydrase 24.2.1.10.641
3po6DT9Carbonic anhydrase 24.2.1.10.640
3n4bWWZCarbonic anhydrase 24.2.1.10.639
3dccD9ZCarbonic anhydrase 24.2.1.10.636
1g4oBSBCarbonic anhydrase 24.2.1.10.635
3f4xKLTCarbonic anhydrase 24.2.1.10.631
1if5FBTCarbonic anhydrase 24.2.1.10.630
3v2jAZMCarbonic anhydrase 24.2.1.10.629
3oimVZ5Carbonic anhydrase 24.2.1.10.628
4k13ETSCarbonic anhydrase 24.2.1.10.627
1g45FSBCarbonic anhydrase 24.2.1.10.624
1xpz4TZCarbonic anhydrase 24.2.1.10.624
3n0nP9BCarbonic anhydrase 24.2.1.10.624
3sbiE90Carbonic anhydrase 24.2.1.10.624
3s9tE49Carbonic anhydrase 24.2.1.10.623
4kap1QVCarbonic anhydrase 24.2.1.10.622
3mnaDWHCarbonic anhydrase 24.2.1.10.621
3oysOYSCarbonic anhydrase 24.2.1.10.617
1kwqSG1Carbonic anhydrase 24.2.1.10.616
4m2rBZ1Carbonic anhydrase 24.2.1.10.616
2wegFBVCarbonic anhydrase 24.2.1.10.615
3saxE50Carbonic anhydrase 24.2.1.10.615
3mzcS6ICarbonic anhydrase 24.2.1.10.614
3m2yBE0Carbonic anhydrase 24.2.1.10.613
1okmSABCarbonic anhydrase 24.2.1.10.612
4m2vBZ1Carbonic anhydrase 24.2.1.10.610
1bn3AL6Carbonic anhydrase 24.2.1.10.609
4knjE1FCarbonic anhydrase 24.2.1.10.609
2weoFBWCarbonic anhydrase 24.2.1.10.608
3oyqOYQCarbonic anhydrase 24.2.1.10.608
3mhiJ90Carbonic anhydrase 24.2.1.10.607
4n16CHDCarbonic anhydrase 24.2.1.10.607
3oy0OY0Carbonic anhydrase 24.2.1.10.604
3igpDT7Carbonic anhydrase 24.2.1.10.603
1xq04TRCarbonic anhydrase 24.2.1.10.601
4pxxCHDCarbonic anhydrase 24.2.1.10.600
4bf19FKCarbonic anhydrase 24.2.1.10.599
3t84SG6Carbonic anhydrase 24.2.1.10.593
3m67E36Carbonic anhydrase 24.2.1.10.589
3m96E38Carbonic anhydrase 24.2.1.10.588
3kigDA4Carbonic anhydrase 24.2.1.10.586
1cnwEG1Carbonic anhydrase 24.2.1.10.585
3mdzEZLCarbonic anhydrase 74.2.1.10.585
3n2pAYXCarbonic anhydrase 24.2.1.10.585
1cnyEG3Carbonic anhydrase 24.2.1.10.584
3bl1BL1Carbonic anhydrase 24.2.1.10.581
3m40J45Carbonic anhydrase 24.2.1.10.580
3myqE27Carbonic anhydrase 24.2.1.10.580
3zncBZ1Carbonic anhydrase 44.2.1.10.580
2x7tWZBCarbonic anhydrase 24.2.1.10.576
4k0tD9ZCarbonic anhydrase 24.2.1.10.575
1if7SBRCarbonic anhydrase 24.2.1.10.574
1jd0AZMCarbonic anhydrase 124.2.1.10.574
1oklMNSCarbonic anhydrase 24.2.1.10.574
4kp5E1FCarbonic anhydrase 124.2.1.10.572
4kp8E1GCarbonic anhydrase 124.2.1.10.572
1oq5CELCarbonic anhydrase 24.2.1.10.570
1i9qIOFCarbonic anhydrase 24.2.1.10.569
2wd2MS5Carbonic anhydrase 24.2.1.10.569
3f7uAG4Carbonic anhydrase 44.2.1.10.566
3mhcARZCarbonic anhydrase 24.2.1.10.566
4ht2V50Carbonic anhydrase 124.2.1.10.566
5fltVJJCarbonic anhydrase 24.2.1.10.566
2q1qOSPCarbonic anhydrase 24.2.1.10.561
3nb5R21Carbonic anhydrase 24.2.1.10.561
4dz7D02Carbonic anhydrase 24.2.1.10.560
1cnxEG2Carbonic anhydrase 24.2.1.10.557
3t82SG4Carbonic anhydrase 24.2.1.10.553
3dbuD8WCarbonic anhydrase 24.2.1.10.552
2powI7CCarbonic anhydrase 24.2.1.10.550
3p5lIT5Carbonic anhydrase 24.2.1.10.550
1eouSMSCarbonic anhydrase 24.2.1.10.548
1g54FFBCarbonic anhydrase 24.2.1.10.547
4lu3AZMCarbonic anhydrase 144.2.1.10.546
1i9pIOECarbonic anhydrase 24.2.1.10.545
3dcwEZLCarbonic anhydrase 24.2.1.10.545
2x7uWZACarbonic anhydrase 24.2.1.10.544
3l14I7BCarbonic anhydrase 24.2.1.10.544
1oknSTBCarbonic anhydrase 24.2.1.10.541
3f7bAG5Carbonic anhydrase 44.2.1.10.539
3dd0EZLCarbonic anhydrase 24.2.1.10.531
4x5sAZMCarbonic anhydrase (Carbonate dehydratase)/0.531
3fw3ETSCarbonic anhydrase 44.2.1.10.525
4knmE1ECarbonic anhydrase 134.2.1.10.522
4uovAZMCarbonate dehydratase/0.521
1ydaAZMCarbonic anhydrase 24.2.1.10.517
1if8SBSCarbonic anhydrase 24.2.1.10.515
4k0zMZMCarbonic anhydrase 24.2.1.10.512
4xiwAZMCarbonic anhydrase, alpha type/0.507
1rj6AZMCarbonic anhydrase 144.2.1.10.505
1h50FMNPentaerythritol tetranitrate reductase/0.500
3t85SG7Carbonic anhydrase 24.2.1.10.499
3h3r14HCollagen type IV alpha-3-binding protein/0.494
3h3t16HCollagen type IV alpha-3-binding protein/0.493
3rz8RZ8Carbonic anhydrase 24.2.1.10.487
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.481
2cy0NAPShikimate dehydrogenase (NADP(+))/0.475
3lxeTORCarbonic anhydrase 14.2.1.10.474
4iae1DXAlr2278 protein/0.474
2rqfJH3Hemolymph juvenile hormone binding protein/0.473
3zbsOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.473
5fl49FKCarbonic anhydrase 94.2.1.10.472
4bfvZVVPantothenate kinase2.7.1.330.471
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.471
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.471
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.469
3h3sH15Collagen type IV alpha-3-binding protein/0.468
3p62FMNPentaerythritol tetranitrate reductase/0.468
3fhxPLPPyridoxal kinase2.7.1.350.467
2vteIK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.466
3gwfNAPCyclohexanone monooxygenase/0.466
1p0pBCHCholinesterase3.1.1.80.465
2abbFMNPentaerythritol tetranitrate reductase/0.465
3g5sFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.465
3t3r9PLCytochrome P450 2A61.14.130.465
2q1uNADPutative nucleotide sugar epimerase/ dehydratase/0.464
4iah1DXAlr2278 protein/0.464
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.463
2a94AP0L-lactate dehydrogenase1.1.1.270.461
3zbzOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.461
4q0kGA3Phytohormone-binding protein/0.461
3c3xNAPEugenol synthase 11.1.1.3180.459
1h63FMNPentaerythritol tetranitrate reductase/0.458
2pbwDOQGlutamate receptor ionotropic, kainate 1/0.458
3h3qH13Collagen type IV alpha-3-binding protein/0.458
2vn1FK5Peptidylprolyl isomerase/0.457
3jypNADQuinate/shikimate dehydrogenase (NAD(+))/0.457
4mihFADPyranose 2-oxidase1.1.3.100.457
3f03FMNPentaerythritol tetranitrate reductase/0.456
3ixp834Ecdysone receptor/0.456
1kw9BPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.455
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
1iayAVG1-aminocyclopropane-1-carboxylate synthase 24.4.1.140.454
3nmpPYVAbscisic acid receptor PYL2/0.454
4bfxZVXPantothenate kinase2.7.1.330.454
1kfbIGPTryptophan synthase alpha chain/0.453
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.453
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
3gfbNADL-threonine 3-dehydrogenase/0.453
1fm4DXCMajor pollen allergen Bet v 1-L/0.452
1icsFMN12-oxophytodienoate reductase 11.3.1.420.452
1zrqFAD5,10-methylenetetrahydrofolate reductase1.5.1.200.452
2vatCOAAcetyl-CoA--deacetylcephalosporin C acetyltransferase2.3.1.1750.452
3nbrASDSteroid Delta-isomerase5.3.3.10.452
3t4eNADQuinate/shikimate dehydrogenase/0.452
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.452
1c9wNAPAldose reductase-related protein 2/0.451
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.450
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.450
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.449
3e34ED1Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.449
3e34ED1Protein farnesyltransferase subunit beta2.5.1.580.449
3pl8FADPyranose 2-oxidase/0.449
4hu1V13Carbonic anhydrase 134.2.1.10.449
4rp8ASCAscorbate-specific PTS system EIIC component/0.449
1eiiRTLRetinol-binding protein 2/0.448
1x1cSAHC-20 methyltransferase/0.448
2c9zQUEAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.448
3p8iFMNPentaerythritol tetranitrate reductase/0.448
3zcnATPAdenosine monophosphate-protein transferase SoFic2.7.7.n10.448
4b4vL34Bifunctional protein FolD/0.448
1o9bNAIQuinate/shikimate dehydrogenase/0.447
2vigFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.10.447
2wqpWQPPolysialic acid capsule biosynthesis protein SiaC/0.447
2xuoTZ4Acetylcholinesterase3.1.1.70.447
4b64NAPL-ornithine N(5)-monooxygenase/0.447
1npdNADQuinate/shikimate dehydrogenase/0.446
1x8lOXRRetinol dehydratase/0.446
2ejzSAHDiphthine synthase/0.446
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.446
3t3q9PLCytochrome P450 2A61.14.130.446
4bfzZVZPantothenate kinase2.7.1.330.446
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.445
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
2ea2F77Methionine aminopeptidase 2/0.445
2rlcCHDCholoylglycine hydrolase3.5.1.240.445
2zbaZBATrichothecene 3-O-acetyltransferase/0.445
3fr5I4AFatty acid-binding protein, adipocyte/0.445
4k6fNAPPutative Acetoacetyl-CoA reductase/0.445
4knnE1FCarbonic anhydrase 134.2.1.10.445
1lgtBP3Biphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.444
1w6hTITPlasmepsin-23.4.23.390.444
2g8yNADHydroxycarboxylate dehydrogenase B/0.444
2gpjFADSiderophore-interacting protein/0.444
3br3ETHTH-type transcriptional regulator QacR/0.444
3l6jZ90Alr2278 protein/0.444
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.444
4mr72BVGamma-aminobutyric acid type B receptor subunit 1/0.444
7stdCRPScytalone dehydratase4.2.1.940.444
1foaUD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase2.4.1.1010.443
1h51FMNPentaerythritol tetranitrate reductase/0.443
1x1dSAHC-20 methyltransferase/0.443
2he5NDPAldo-keto reductase family 1 member C211.1.10.443
3iexGMPPurine nucleoside phosphorylase/0.443
3p67FMNPentaerythritol tetranitrate reductase/0.443
3p84FMNPentaerythritol tetranitrate reductase/0.443
3v0o4GWHisto-blood group ABO system transferase/0.443
4a862ANMajor pollen allergen Bet v 1-A/0.443
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.443
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1xddAAYIntegrin alpha-L/0.442
2gv8NDPThiol-specific monooxygenase1.14.130.442
2oegUPGUDP-glucose pyrophosphorylase/0.442
2qimZEAClass 10 plant pathogenesis-related protein/0.442
2uxoTACHTH-type transcriptional regulator TtgR/0.442
3aosJH2Hemolymph juvenile hormone binding protein/0.442
3gxfIFMGlucosylceramidase3.2.1.450.442
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
3nuvASDSteroid Delta-isomerase5.3.3.10.442
3otwCOAPhosphopantetheine adenylyltransferase/0.442
3pghFLPProstaglandin G/H synthase 21.14.99.10.442
4boeCLRJapanin/0.442
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.442
1i59ANPChemotaxis protein CheA2.7.13.30.441
1qyw5SDEstradiol 17-beta-dehydrogenase 11.1.1.620.441
1x1bSAHC-20 methyltransferase/0.441
2cekN8TAcetylcholinesterase3.1.1.70.441
2xw7NDPDihydrofolate reductase/0.441
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.441
4bfwZVWPantothenate kinase2.7.1.330.441
4jqh1MFAlr2278 protein/0.441
1j37X8ZAngiotensin-converting enzyme3.4.15.10.440
1ni4TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.440
1ni4TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.440
1q45FMN12-oxophytodienoate reductase 31.3.1.420.440
1yw9A84Methionine aminopeptidase 2/0.440
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.440
3fhxPXLPyridoxal kinase2.7.1.350.440
4gz612VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.440
5jscFADPutative acyl-CoA dehydrogenase/0.440