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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jqbDX6Pteridine reductase, putative

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3jqbDX6Pteridine reductase, putative/1.000
3jqgAX6Pteridine reductase, putative/0.581
3mcvMCVPteridine reductase/0.567
3jq7DX2Pteridine reductase, putative/0.565
3bmqAX5Pteridine reductase/0.528
3jq9AX1Pteridine reductase, putative/0.470
2wd7VGDPteridine reductase/0.468
3bmnAX3Pteridine reductase/0.468
3jq8DX3Pteridine reductase, putative/0.464
2x9gLYAPteridine reductase/0.452
2x9nAX3Pteridine reductase/0.448