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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ivcFG4Pantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ivcFG4Pantothenate synthetase6.3.2.11.000
4ddhMS0Pantothenate synthetase6.3.2.10.549
2a84ATPPantothenate synthetase6.3.2.10.500
5kwvANPPantothenate synthetase/0.475
3imgBZ2Pantothenate synthetase6.3.2.10.464
1n2hPAJPantothenate synthetase6.3.2.10.462
1n2jPAFPantothenate synthetase6.3.2.10.457
3imeBZ2Pantothenate synthetase6.3.2.10.453
3ioeA7DPantothenate synthetase6.3.2.10.450
3iocA5DPantothenate synthetase6.3.2.10.443