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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3isjA8DPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3isjA8DPantothenate synthetase6.3.2.11.000
4ddhMS0Pantothenate synthetase6.3.2.10.701
3imeBZ2Pantothenate synthetase6.3.2.10.692
3iobA4DPantothenate synthetase6.3.2.10.635
3ivgFG5Pantothenate synthetase6.3.2.10.626
3imgBZ3Pantothenate synthetase6.3.2.10.601
3coy53HPantothenate synthetase6.3.2.10.597
3iodA6DPantothenate synthetase6.3.2.10.587
3iocA5DPantothenate synthetase6.3.2.10.581
1n2jPAFPantothenate synthetase6.3.2.10.571
3coz54HPantothenate synthetase6.3.2.10.571
3imgBZ2Pantothenate synthetase6.3.2.10.568
1n2iPAJPantothenate synthetase6.3.2.10.555
1n2hPAJPantothenate synthetase6.3.2.10.548
5kwvANPPantothenate synthetase/0.523
2x3fAPCPantothenate synthetase/0.521
3ioeA7DPantothenate synthetase6.3.2.10.520
3cow52HPantothenate synthetase6.3.2.10.519
3ivxFG6Pantothenate synthetase6.3.2.10.503
1n2gAPCPantothenate synthetase6.3.2.10.490
1n2eAPCPantothenate synthetase6.3.2.10.457
5hg0SAMPantothenate synthetase/0.455