sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3is2 | FAD | Vivid PAS protein VVD |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3is2 | FAD | Vivid PAS protein VVD | / | 1.000 | |
| 3d72 | FAD | Vivid PAS protein VVD | / | 0.678 | |
| 2pd8 | FAD | Vivid PAS protein VVD | / | 0.617 | |
| 2pdt | FAD | Vivid PAS protein VVD | / | 0.589 | |
| 3hji | FAD | Vivid PAS protein VVD | / | 0.568 | |
| 2z6d | FMN | Phototropin-2 | 2.7.11.1 | 0.552 | |
| 3hjk | FAD | Vivid PAS protein VVD | / | 0.549 | |
| 2pd7 | FAD | Vivid PAS protein VVD | / | 0.545 | |
| 3p7n | FMN | Light-activated DNA-binding protein EL222 | / | 0.543 | |
| 4wuj | FMN | Glycoside hydrolase family 15, cellulose signaling associated protein envoy | / | 0.543 | |
| 4r38 | RBF | Blue-light-activated histidine kinase 2 | 2.7.13.3 | 0.515 | |
| 4eet | FMN | Phototropin-2 | 2.7.11.1 | 0.508 | |
| 5dkk | FMN | Predicted protein | / | 0.492 | |
| 1n9n | FMN | Putative blue light receptor | / | 0.490 | |
| 3t50 | FMN | Blue-light-activated histidine kinase | 2.7.13.3 | 0.485 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.480 | |
| 5dju | FMN | NPH1-2 | / | 0.480 | |
| 3sw1 | FMN | Sensory box protein | / | 0.477 | |
| 1n9l | FMN | Putative blue light receptor | / | 0.473 | |
| 2pr5 | FMN | Blue-light photoreceptor | / | 0.470 | |
| 5djt | FMN | NPH1-2 | / | 0.467 | |
| 2p4y | C03 | Peroxisome proliferator-activated receptor gamma | / | 0.466 | |
| 3ue6 | FMN | Aureochrome1 | / | 0.458 | |
| 1kvs | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.455 | |
| 3ub5 | ATP | Actin, cytoplasmic 1 | / | 0.452 | |
| 1qvr | ANP | Chaperone protein ClpB | / | 0.445 | |
| 1hxb | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.444 | |
| 3icr | COA | Coenzyme A disulfide reductase | / | 0.444 | |
| 4eeu | FMN | Phototropin-2 | 2.7.11.1 | 0.444 | |
| 4jy2 | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.444 | |
| 4q73 | FAD | Bifunctional protein PutA | / | 0.442 | |
| 1bdr | IM1 | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
| 1uda | UFG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.440 |