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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ioeA7DPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ioeA7DPantothenate synthetase6.3.2.11.000
3ivxFG6Pantothenate synthetase6.3.2.10.648
3cow52HPantothenate synthetase6.3.2.10.614
1n2iPAJPantothenate synthetase6.3.2.10.574
3iocA5DPantothenate synthetase6.3.2.10.571
1n2hPAJPantothenate synthetase6.3.2.10.561
1n2bPAFPantothenate synthetase6.3.2.10.535
1n2gAPCPantothenate synthetase6.3.2.10.533
1n2jPAFPantothenate synthetase6.3.2.10.512
2x3fAPCPantothenate synthetase/0.509
3coy53HPantothenate synthetase6.3.2.10.498
1n2eAPCPantothenate synthetase6.3.2.10.480
4ddhMS0Pantothenate synthetase6.3.2.10.476
3coz54HPantothenate synthetase6.3.2.10.474
3iobA4DPantothenate synthetase6.3.2.10.472
3ivgFG5Pantothenate synthetase6.3.2.10.470
3isjA8DPantothenate synthetase6.3.2.10.465
3iodA6DPantothenate synthetase6.3.2.10.459
3imgBZ3Pantothenate synthetase6.3.2.10.450