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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iobA4DPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3iobA4DPantothenate synthetase6.3.2.11.000
3iodA6DPantothenate synthetase6.3.2.10.825
3imeBZ2Pantothenate synthetase6.3.2.10.721
3coz54HPantothenate synthetase6.3.2.10.695
3ivgFG5Pantothenate synthetase6.3.2.10.683
4ddhMS0Pantothenate synthetase6.3.2.10.677
3isjA8DPantothenate synthetase6.3.2.10.670
3imgBZ3Pantothenate synthetase6.3.2.10.669
3coy53HPantothenate synthetase6.3.2.10.649
3imgBZ2Pantothenate synthetase6.3.2.10.620
3iocA5DPantothenate synthetase6.3.2.10.600
3ioeA7DPantothenate synthetase6.3.2.10.551
1n2hPAJPantothenate synthetase6.3.2.10.548
1n2iPAJPantothenate synthetase6.3.2.10.545
3cow52HPantothenate synthetase6.3.2.10.525
1n2jPAFPantothenate synthetase6.3.2.10.523
2x3fAPCPantothenate synthetase/0.513
3ivxFG6Pantothenate synthetase6.3.2.10.511
5kwvANPPantothenate synthetase/0.488
1n2gAPCPantothenate synthetase6.3.2.10.483
5hg0SAMPantothenate synthetase/0.479
1n2eAPCPantothenate synthetase6.3.2.10.459
3ag6PAJPantothenate synthetase/0.458
1n2bPAFPantothenate synthetase6.3.2.10.450