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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3imgBZ2Pantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3imgBZ2Pantothenate synthetase6.3.2.11.000
3imgBZ3Pantothenate synthetase6.3.2.10.854
3imeBZ2Pantothenate synthetase6.3.2.10.629
3iodA6DPantothenate synthetase6.3.2.10.628
3ivgFG5Pantothenate synthetase6.3.2.10.592
3iobA4DPantothenate synthetase6.3.2.10.551
3coy53HPantothenate synthetase6.3.2.10.540
3coz54HPantothenate synthetase6.3.2.10.535
3iocA5DPantothenate synthetase6.3.2.10.524
3isjA8DPantothenate synthetase6.3.2.10.522
4ddhMS0Pantothenate synthetase6.3.2.10.522
1n2jPAFPantothenate synthetase6.3.2.10.482
1n2hPAJPantothenate synthetase6.3.2.10.479
1n2iPAJPantothenate synthetase6.3.2.10.452