sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3iif	APR	Core histone macro-H2A.1

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3iif	APR	Core histone macro-H2A.1	/	1.000
3iid	APR	Core histone macro-H2A.1	/	0.572
3q71	AR6	Poly [ADP-ribose] polymerase 14	2.4.2.30	0.517
4d86	ADP	Poly [ADP-ribose] polymerase 14	2.4.2.30	0.481
2bfr	ADP	[Protein ADP-ribosylglutamate] hydrolase AF_1521	3.2.2	0.475
4kx6	FAD	Fumarate reductase flavoprotein subunit	1.3.5.4	0.464
2ylr	FAD	Phenylacetone monooxygenase	1.14.13.92	0.452
3uoz	FAD	2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase	1.14.13.160	0.450
3vfq	AR6	Poly [ADP-ribose] polymerase 14	2.4.2.30	0.444
5cb3	APR	O-acetyl-ADP-ribose deacetylase	/	0.443