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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ig7EFPCyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ig7EFPCyclin-dependent kinase 22.7.11.221.000
2w06FRVCyclin-dependent kinase 22.7.11.220.592
2r3kSCQCyclin-dependent kinase 22.7.11.220.563
3r9hZ67Cyclin-dependent kinase 22.7.11.220.548
3rjc06ZCyclin-dependent kinase 22.7.11.220.546
4fkj11KCyclin-dependent kinase 22.7.11.220.544
3iggEFQCyclin-dependent kinase 22.7.11.220.543
2b55D31Cyclin-dependent kinase 22.7.11.220.540
3sqq99ZCyclin-dependent kinase 22.7.11.220.534
3lfnA27Cyclin-dependent kinase 22.7.11.220.533
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.529
3qtrX36Cyclin-dependent kinase 22.7.11.220.528
3rk909ZCyclin-dependent kinase 22.7.11.220.522
3qruX19Cyclin-dependent kinase 22.7.11.220.521
3rpv26ZCyclin-dependent kinase 22.7.11.220.520
2r3lSCWCyclin-dependent kinase 22.7.11.220.519
1b38ATPCyclin-dependent kinase 22.7.11.220.518
1pxmCK5Cyclin-dependent kinase 22.7.11.220.518
3qxoX65Cyclin-dependent kinase 22.7.11.220.517
3qwjX6ACyclin-dependent kinase 22.7.11.220.516
4bgh3I6Cyclin-dependent kinase 22.7.11.220.516
3rni21ZCyclin-dependent kinase 22.7.11.220.515
3qu0X40Cyclin-dependent kinase 22.7.11.220.514
3r9dX6BCyclin-dependent kinase 22.7.11.220.514
1v1k3FPCyclin-dependent kinase 22.7.11.220.513
3qqkX02Cyclin-dependent kinase 22.7.11.220.512
1ke5LS1Cyclin-dependent kinase 22.7.11.220.511
2r3p3SCCyclin-dependent kinase 22.7.11.220.511
3rm719ZCyclin-dependent kinase 22.7.11.220.511
4fkpLS5Cyclin-dependent kinase 22.7.11.220.511
1gih1PUCyclin-dependent kinase 22.7.11.220.508
3rk708ZCyclin-dependent kinase 22.7.11.220.508
3rpo24ZCyclin-dependent kinase 22.7.11.220.508
3qtuX44Cyclin-dependent kinase 22.7.11.220.507
3ral04ZCyclin-dependent kinase 22.7.11.220.507
3roy22ZCyclin-dependent kinase 22.7.11.220.507
3wblPDYCyclin-dependent kinase 22.7.11.220.507
1ckpPVBCyclin-dependent kinase 22.7.11.220.505
2btsU32Cyclin-dependent kinase 22.7.11.220.505
4fkq42KCyclin-dependent kinase 22.7.11.220.505
3r1sX73Cyclin-dependent kinase 22.7.11.220.504
3rm618ZCyclin-dependent kinase 22.7.11.220.504
2c6o4SPCyclin-dependent kinase 22.7.11.220.503
1dm2HMDCyclin-dependent kinase 22.7.11.220.502
1w0xOLOCyclin-dependent kinase 22.7.11.220.502
2w1hL0FCyclin-dependent kinase 22.7.11.220.502
3qtzX42Cyclin-dependent kinase 22.7.11.220.502
3r73X87Cyclin-dependent kinase 22.7.11.220.502
1ke7LS3Cyclin-dependent kinase 22.7.11.220.501
3qzhX69Cyclin-dependent kinase 22.7.11.220.501
4fkg4CKCyclin-dependent kinase 22.7.11.220.501
3lfsA07Cyclin-dependent kinase 22.7.11.220.499
3r7iX9ICyclin-dependent kinase 22.7.11.220.499
3rk507ZCyclin-dependent kinase 22.7.11.220.499
3s2pPMUCyclin-dependent kinase 22.7.11.220.499
1y91CT9Cyclin-dependent kinase 22.7.11.220.498
3raiX85Cyclin-dependent kinase 22.7.11.220.498
3qtxX43Cyclin-dependent kinase 22.7.11.220.497
3rak03ZCyclin-dependent kinase 22.7.11.220.497
3s0o50ZCyclin-dependent kinase 22.7.11.220.497
1h0w207Cyclin-dependent kinase 22.7.11.220.496
1ke6LS2Cyclin-dependent kinase 22.7.11.220.496
1ke9LS5Cyclin-dependent kinase 22.7.11.220.496
2j9mPY8Cyclin-dependent kinase 22.7.11.220.496
4fkr45KCyclin-dependent kinase 22.7.11.220.496
4ii5ADPCyclin-dependent kinase 22.7.11.220.495
2uzoC62Cyclin-dependent kinase 22.7.11.220.493
3unk0BYCyclin-dependent kinase 22.7.11.220.493
4ek816KCyclin-dependent kinase 22.7.11.220.493
2a0cCK9Cyclin-dependent kinase 22.7.11.220.492
3r8lZ30Cyclin-dependent kinase 22.7.11.220.492
4fx360KCyclin-dependent kinase 22.7.11.220.492
4fki09KCyclin-dependent kinase 22.7.11.220.491
3qqfX07Cyclin-dependent kinase 22.7.11.220.490
3qzgX67Cyclin-dependent kinase 22.7.11.220.490
1vyw292Cyclin-dependent kinase 22.7.11.220.489
2r3r6SCCyclin-dependent kinase 22.7.11.220.489
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.489
3r6xX84Cyclin-dependent kinase 22.7.11.220.489
4fkw62KCyclin-dependent kinase 22.7.11.220.489
1h1r6CPCyclin-dependent kinase 22.7.11.220.488
3ezrEZRCyclin-dependent kinase 22.7.11.220.488
3r7yZ04Cyclin-dependent kinase 22.7.11.220.488
1g5sI17Cyclin-dependent kinase 22.7.11.220.487
1p2a5BNCyclin-dependent kinase 22.7.11.220.486
2a4lRRCCyclin-dependent kinase 22.7.11.220.486
3r71X86Cyclin-dependent kinase 22.7.11.220.486
3sw418KCyclin-dependent kinase 22.7.11.220.486
3rmf20ZCyclin-dependent kinase 22.7.11.220.485
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.484
3ezvEZVCyclin-dependent kinase 22.7.11.220.484
3r1qX75Cyclin-dependent kinase 22.7.11.220.484
3r8vZ62Cyclin-dependent kinase 22.7.11.220.484
1h1s4SPCyclin-dependent kinase 22.7.11.220.483
2iw84SPCyclin-dependent kinase 22.7.11.220.483
2r64740Cyclin-dependent kinase 22.7.11.220.483
3r8pZ46Cyclin-dependent kinase 22.7.11.220.483
1urwI1PCyclin-dependent kinase 22.7.11.220.482
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.482
3qx2X63Cyclin-dependent kinase 22.7.11.220.481
1e1xNW1Cyclin-dependent kinase 22.7.11.220.480
3qqhX0ACyclin-dependent kinase 22.7.11.220.479
1fvt106Cyclin-dependent kinase 22.7.11.220.478
3sw719KCyclin-dependent kinase 22.7.11.220.478
3unj0BXCyclin-dependent kinase 22.7.11.220.478
4bcpT3CCyclin-dependent kinase 22.7.11.220.478
3r28XA0Cyclin-dependent kinase 22.7.11.220.477
3r8zZ63Cyclin-dependent kinase 22.7.11.220.477
4fkt48KCyclin-dependent kinase 22.7.11.220.477
1oguST8Cyclin-dependent kinase 22.7.11.220.476
2vtnLZ7Cyclin-dependent kinase 22.7.11.220.475
2vttLZDCyclin-dependent kinase 22.7.11.220.475
3rkb12ZCyclin-dependent kinase 22.7.11.220.475
1oiyN41Cyclin-dependent kinase 22.7.11.220.474
3ql8X01Cyclin-dependent kinase 22.7.11.220.474
3qtqX35Cyclin-dependent kinase 22.7.11.220.474
1ke8LS4Cyclin-dependent kinase 22.7.11.220.473
1ykr628Cyclin-dependent kinase 22.7.11.220.473
3s1h56ZCyclin-dependent kinase 22.7.11.220.473
1pxoCK7Cyclin-dependent kinase 22.7.11.220.472
2w05FRTCyclin-dependent kinase 22.7.11.220.472
2wpa889Cyclin-dependent kinase 22.7.11.220.471
3ddpRC8Cyclin-dependent kinase 22.7.11.220.471
3ti1B49Cyclin-dependent kinase 22.7.11.220.471
4ek610KCyclin-dependent kinase 22.7.11.220.470
1vyzN5BCyclin-dependent kinase 22.7.11.220.469
2vu3LZECyclin-dependent kinase 22.7.11.220.469
3rahO1ZCyclin-dependent kinase 22.7.11.220.469
2bheBRYCyclin-dependent kinase 22.7.11.220.468
2btrU73Cyclin-dependent kinase 22.7.11.220.468
2r3mSCXCyclin-dependent kinase 22.7.11.220.468
4acm7YGCyclin-dependent kinase 22.7.11.220.468
3qwkX62Cyclin-dependent kinase 22.7.11.220.467
3r1yX76Cyclin-dependent kinase 22.7.11.220.467
1oitHDTCyclin-dependent kinase 22.7.11.220.465
3r7eX88Cyclin-dependent kinase 22.7.11.220.464
1di8DTQCyclin-dependent kinase 22.7.11.220.463
1h1pCMGCyclin-dependent kinase 22.7.11.220.463
2bhhRYUCyclin-dependent kinase 22.7.11.220.463
3ddqRRCCyclin-dependent kinase 22.7.11.220.463
3lfqA28Cyclin-dependent kinase 22.7.11.220.463
4fkv61KCyclin-dependent kinase 22.7.11.220.462
1oi9N20Cyclin-dependent kinase 22.7.11.220.461
4lyn1YGCyclin-dependent kinase 22.7.11.220.461
1h1q2A6Cyclin-dependent kinase 22.7.11.220.460
3qziX72Cyclin-dependent kinase 22.7.11.220.460
2b52D42Cyclin-dependent kinase 22.7.11.220.459
4eok4SPCyclin-dependent kinase 22.7.11.220.459
1pxlCK4Cyclin-dependent kinase 22.7.11.220.458
1pyePM1Cyclin-dependent kinase 22.7.11.220.458
3qtwX3ACyclin-dependent kinase 22.7.11.220.458
4ez30S0Cyclin-dependent kinase 22.7.11.220.458
1finATPCyclin-dependent kinase 22.7.11.220.457
1oiuN76Cyclin-dependent kinase 22.7.11.220.457
1qmzATPCyclin-dependent kinase 22.7.11.220.457
2duv371Cyclin-dependent kinase 22.7.11.220.457
2r3gSC9Cyclin-dependent kinase 22.7.11.220.457
4eos1ROCyclin-dependent kinase 22.7.11.220.457
1gii1PUCyclin-dependent kinase 22.7.11.220.456
3dogNNNCyclin-dependent kinase 22.7.11.220.456
3rpy27ZCyclin-dependent kinase 22.7.11.220.456
5aniES4Cyclin-dependent kinase 22.7.11.220.456
2wxvWXVCyclin-dependent kinase 22.7.11.220.455
3py0SU9Cyclin-dependent kinase 22.7.11.220.455
3rpr25ZCyclin-dependent kinase 22.7.11.220.454
4eor4SPCyclin-dependent kinase 22.7.11.220.454
4qmpDKISerine/threonine-protein kinase 242.7.11.10.454
2exmZIPCyclin-dependent kinase 22.7.11.220.453
3r7vZ02Cyclin-dependent kinase 22.7.11.220.453
1h0vUN4Cyclin-dependent kinase 22.7.11.220.452
2c69CT8Cyclin-dependent kinase 22.7.11.220.452
3rzb02ZCyclin-dependent kinase 22.7.11.220.452
1fvv107Cyclin-dependent kinase 22.7.11.220.451
1unlRRCCyclin-dependent-like kinase 52.7.11.10.451
2i40BLZCyclin-dependent kinase 22.7.11.220.451
4fko20KCyclin-dependent kinase 22.7.11.220.451
1b39ATPCyclin-dependent kinase 22.7.11.220.450
4kd11QKCyclin-dependent kinase 22.7.11.220.449
2iw94SPCyclin-dependent kinase 22.7.11.220.448
2vtsLZCCyclin-dependent kinase 22.7.11.220.446
1r78FMDCyclin-dependent kinase 22.7.11.220.445
2uznC96Cyclin-dependent kinase 22.7.11.220.445
1oiqHDUCyclin-dependent kinase 22.7.11.220.444
3bhtMFRCyclin-dependent kinase 22.7.11.220.444
2vthLZ2Cyclin-dependent kinase 22.7.11.220.443
2w17I19Cyclin-dependent kinase 22.7.11.220.443
3mfsANPPeripheral plasma membrane protein CASK2.7.11.10.443
3qzfX66Cyclin-dependent kinase 22.7.11.220.442
2fvdLIACyclin-dependent kinase 22.7.11.220.441
2wihP48Cyclin-dependent kinase 22.7.11.220.441
3fz1B98Cyclin-dependent kinase 22.7.11.220.441
3r7uX96Cyclin-dependent kinase 22.7.11.220.441
4eon1ROCyclin-dependent kinase 22.7.11.220.441
1oirHDYCyclin-dependent kinase 22.7.11.220.440
2r3fSC8Cyclin-dependent kinase 22.7.11.220.440
3tnwF18Cyclin-dependent kinase 22.7.11.220.440