Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3id8MRKGlucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3id8MRKGlucokinase2.7.1.21.000
4mleVO1Glucokinase2.7.1.20.559
1v4sMRKGlucokinase2.7.1.20.489
3a0iAJIGlucokinase2.7.1.20.488
4l3q926Glucokinase2.7.1.20.487
3vev0H4Glucokinase2.7.1.20.483
3h1vTK1Glucokinase2.7.1.20.473
4mlhVO2Glucokinase2.7.1.20.457
3vey0H5Glucokinase2.7.1.20.455