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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i0rRT3Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3i0rRT3Gag-Pol polyprotein2.7.7.491.000
1tktH12Gag-Pol polyprotein2.7.7.490.565
3ffi3OBGag-Pol polyprotein2.7.7.490.564
4i7fNVEGag-Pol polyprotein2.7.7.490.558
3is9AC7Gag-Pol polyprotein2.7.7.490.557
1hpzAAPGag-Pol polyprotein2.7.7.490.551
3i0sRT7Gag-Pol polyprotein2.7.7.490.548
1c1bGCAGag-Pol polyprotein2.7.7.490.545
3m8qDJZGag-Pol polyprotein2.7.7.490.537
1revTB9Gag-Pol polyprotein2.7.7.490.533
1rt2TNKGag-Pol polyprotein2.7.7.490.532
1hnvTBOGag-Pol polyprotein2.7.7.490.530
2ze2T27Gag-Pol polyprotein2.7.7.490.529
1tvrTB9Gag-Pol polyprotein2.7.7.490.527
1tl1H18Gag-Pol polyprotein2.7.7.490.524
1tkzH16Gag-Pol polyprotein2.7.7.490.521
3nbpJGZGag-Pol polyprotein2.7.7.490.519
3irxUDRGag-Pol polyprotein2.7.7.490.513
3med65BGag-Pol polyprotein2.7.7.490.513
1fk9EFZGag-Pol polyprotein2.7.7.490.512
1tl3H20Gag-Pol polyprotein2.7.7.490.512
3mec65BGag-Pol polyprotein2.7.7.490.510
1ikwEFZGag-Pol polyprotein2.7.7.490.506
4i2pG73Gag-Pol polyprotein2.7.7.490.505
1s1wUC1Gag-Pol polyprotein2.7.7.490.502
2ban357Gag-Pol polyprotein2.7.7.490.502
2vg7NNIGag-Pol polyprotein2.7.7.490.499
1ikxPNUGag-Pol polyprotein2.7.7.490.498
1eetBFUGag-Pol polyprotein2.7.7.490.497
1hquHBYGag-Pol polyprotein2.7.7.490.497
3di6PDZGag-Pol polyprotein2.7.7.490.496
1ikvEFZGag-Pol polyprotein2.7.7.490.494
3dleGFAGag-Pol polyprotein2.7.7.490.491
1s9eADBGag-Pol polyprotein2.7.7.490.490
1rt4UC1Gag-Pol polyprotein2.7.7.490.486
3megT27Gag-Pol polyprotein2.7.7.490.484
4rw6494Gag-Pol polyprotein2.7.7.490.483
1ep4S11Gag-Pol polyprotein2.7.7.490.481
1vruAAPGag-Pol polyprotein2.7.7.490.479
1klmSPPGag-Pol polyprotein2.7.7.490.478
3meeT27Gag-Pol polyprotein2.7.7.490.478
2opqHBQGag-Pol polyprotein2.7.7.490.477
2rf2MRXGag-Pol polyprotein2.7.7.490.477
1rt5UC2Gag-Pol polyprotein2.7.7.490.475
1s6qTPBGag-Pol polyprotein2.7.7.490.473
1jlaTNKGag-Pol polyprotein2.7.7.490.470
2ic3HBYGag-Pol polyprotein2.7.7.490.468
1tkxGWBGag-Pol polyprotein2.7.7.490.467
4kko1REGag-Pol polyprotein2.7.7.490.467
3dmjGWEPol protein/0.466
1jlgUC1Gag-Pol polyprotein2.7.7.490.464
3be9P04Casein kinase II subunit alpha2.7.11.10.464
3m8p65BGag-Pol polyprotein2.7.7.490.464
4c4f7CEDual specificity protein kinase TTK2.7.12.10.464
4ko0JLJGag-Pol polyprotein2.7.7.490.464
2vg5NNCGag-Pol polyprotein2.7.7.490.460
3lamKRPGag-Pol polyprotein2.7.7.490.460
2hndNVPGag-Pol polyprotein2.7.7.490.459
4i2q1BTGag-Pol polyprotein2.7.7.490.458
1rtiHEFGag-Pol polyprotein2.7.7.490.457
4id5T27Gag-Pol polyprotein2.7.7.490.456
1hniAAAGag-Pol polyprotein2.7.7.490.454
2hnzPC0Gag-Pol polyprotein2.7.7.490.452
3u4uLNHCasein kinase II subunit alpha2.7.11.10.452
1fvv107Cyclin-dependent kinase 22.7.11.220.450
3at4CCKCasein kinase II subunit alpha2.7.11.10.450
4dgmAGICasein kinase II subunit alpha2.7.11.10.448
4grb0XGCasein kinase II subunit alpha2.7.11.10.448
3s1h56ZCyclin-dependent kinase 22.7.11.220.447
3rak03ZCyclin-dependent kinase 22.7.11.220.445
2rkiTT1Gag-Pol polyprotein2.7.7.490.443
2w05FRTCyclin-dependent kinase 22.7.11.220.443
3zc6VFCTyrosine-protein kinase JAK32.7.10.20.443
4anmWULCasein kinase II subunit alpha2.7.11.10.442
5cvfATPCasein kinase II subunit alpha2.7.11.10.441
2pvnP63Casein kinase II subunit alpha2.7.11.10.440