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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hkwIX6Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3hkwIX6Genome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.534
3u4r08FGenome polyprotein2.7.7.480.485
4mka2AYGenome polyprotein2.7.7.480.485
3igvB80Genome polyprotein2.7.7.480.456
3bsc2PDGenome polyprotein2.7.7.480.452
3u4o08EGenome polyprotein2.7.7.480.452
4mkb28VGenome polyprotein2.7.7.480.450
3br9DEYGenome polyprotein2.7.7.480.440