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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hjiFADVivid PAS protein VVD

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3hjiFADVivid PAS protein VVD/1.000
3hjkFADVivid PAS protein VVD/0.880
2pd8FADVivid PAS protein VVD/0.634
2pd7FADVivid PAS protein VVD/0.610
3d72FADVivid PAS protein VVD/0.599
2pdtFADVivid PAS protein VVD/0.545
3is2FADVivid PAS protein VVD/0.494
5djuFMNNPH1-2/0.451
3vthAPCCarbamoyltransferase/0.443
3pjuC2EDiguanylate cyclase/phosphodiesterase/0.442
3k3bADPKinesin-like protein KIF11/0.440