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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gynB42Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gynB42Genome polyprotein2.7.7.481.000
2gc8885Polyprotein/0.631
2giqNN2Genome polyprotein2.7.7.480.626
4ih61EPGenome polyprotein2.7.7.480.583
3br9DEYGenome polyprotein2.7.7.480.582
3tyvHI3Genome polyprotein2.7.7.480.574
3u4r08FGenome polyprotein2.7.7.480.498
3uph0C1Genome polyprotein2.7.7.480.486
4mka2AYGenome polyprotein2.7.7.480.483
3g86T18Genome polyprotein2.7.7.480.479
4ih71ERGenome polyprotein2.7.7.480.471
3e51N35Genome polyprotein2.7.7.480.459
2yoj8Y6Genome polyprotein2.7.7.480.455
3cwj321Genome polyprotein2.7.7.480.445