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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gyjFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gyjFADCholesterol oxidase1.1.3.61.000
4xxgFADCholesterol oxidase1.1.3.60.793
4xwrFADCholesterol oxidase1.1.3.60.774
4rekFADCholesterol oxidase1.1.3.60.769
1b8sFADCholesterol oxidase1.1.3.60.749
1n4uFAECholesterol oxidase1.1.3.60.739
3gyiFADCholesterol oxidase1.1.3.60.737
1ijhFADCholesterol oxidase1.1.3.60.728
4u2lSFDCholesterol oxidase1.1.3.60.707
1b4vFADCholesterol oxidase1.1.3.60.658
1n4vFADCholesterol oxidase1.1.3.60.645
1n4wFADCholesterol oxidase1.1.3.60.612
3b6dFAECholesterol oxidase1.1.3.60.612
3cnjFADCholesterol oxidase1.1.3.60.610
1cboFADCholesterol oxidase1.1.3.60.608
4u2sFDACholesterol oxidase1.1.3.60.604
1cc2FADCholesterol oxidase1.1.3.60.577
1n1pFADCholesterol oxidase1.1.3.60.569
4u2tFADCholesterol oxidase1.1.3.60.555
2gewFADCholesterol oxidase1.1.3.60.531
3coxFADCholesterol oxidase1.1.3.60.479