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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gyiFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gyiFADCholesterol oxidase1.1.3.61.000
4xxgFADCholesterol oxidase1.1.3.60.816
4rekFADCholesterol oxidase1.1.3.60.810
1b8sFADCholesterol oxidase1.1.3.60.790
4xwrFADCholesterol oxidase1.1.3.60.785
1n4uFAECholesterol oxidase1.1.3.60.773
1ijhFADCholesterol oxidase1.1.3.60.765
3gyjFADCholesterol oxidase1.1.3.60.757
1mxtFAECholesterol oxidase1.1.3.60.745
4u2lSFDCholesterol oxidase1.1.3.60.733
1n4vFADCholesterol oxidase1.1.3.60.691
1b4vFADCholesterol oxidase1.1.3.60.682
1cboFADCholesterol oxidase1.1.3.60.668
1n4wFADCholesterol oxidase1.1.3.60.640
3cnjFADCholesterol oxidase1.1.3.60.629
1cc2FADCholesterol oxidase1.1.3.60.622
1n1pFADCholesterol oxidase1.1.3.60.595
4u2sFDACholesterol oxidase1.1.3.60.593
4u2tFADCholesterol oxidase1.1.3.60.474
3coxFADCholesterol oxidase1.1.3.60.465
2gewFADCholesterol oxidase1.1.3.60.461