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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3golXNDGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3golXNDGenome polyprotein2.7.7.481.000
4ih71ERGenome polyprotein2.7.7.480.643
4mk728OGenome polyprotein2.7.7.480.616
4iz02BIGenome polyprotein2.7.7.480.603
2fvc888Polyprotein/0.598
3e51N35Genome polyprotein2.7.7.480.580
3d5m4MSGenome polyprotein2.7.7.480.579
3h98B5PGenome polyprotein2.7.7.480.575
3co93MSGenome polyprotein2.7.7.480.571
2gc8885Polyprotein/0.569
3cwj321Genome polyprotein2.7.7.480.569
3ske054Genome polyprotein2.7.7.480.568
1z4uPH9Polyprotein/0.566
3bsa1PDGenome polyprotein2.7.7.480.559
3fqk79ZGenome polyprotein2.7.7.480.557
3h5uH5UGenome polyprotein2.7.7.480.557
3ska053Genome polyprotein2.7.7.480.557
3h59H59Genome polyprotein2.7.7.480.556
4eaw0NQGenome polyprotein2.7.7.480.555
3u4r08FGenome polyprotein2.7.7.480.551
3cvkN34Genome polyprotein2.7.7.480.549
3upi0C2Genome polyprotein2.7.7.480.549
4mk928RGenome polyprotein2.7.7.480.542
3gnwXNCGenome polyprotein2.7.7.480.538
3h5sH5SGenome polyprotein2.7.7.480.534
3gnvXNZGenome polyprotein2.7.7.480.519
3br9DEYGenome polyprotein2.7.7.480.514
3d28B34Genome polyprotein2.7.7.480.509
3gynB42Genome polyprotein2.7.7.480.501
3h2lYAKGenome polyprotein2.7.7.480.497
1vfrFMNMajor NAD(P)H-flavin oxidoreductase1.6.990.451
2qe5617Polyprotein/0.451
1yvfPH7Polyprotein/0.445
2eudGCQRibonucleoside-diphosphate reductase large chain 11.17.4.10.441