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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gnwXNCGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gnwXNCGenome polyprotein2.7.7.481.000
3d28B34Genome polyprotein2.7.7.480.565
3bsa1PDGenome polyprotein2.7.7.480.557
3upi0C2Genome polyprotein2.7.7.480.538
4eaw0NQGenome polyprotein2.7.7.480.535
3d5m4MSGenome polyprotein2.7.7.480.530
3h59H59Genome polyprotein2.7.7.480.529
3ska053Genome polyprotein2.7.7.480.528
3cvkN34Genome polyprotein2.7.7.480.515
3gnvXNZGenome polyprotein2.7.7.480.513
4mk728OGenome polyprotein2.7.7.480.512
1z4uPH9Polyprotein/0.505
3h2lYAKGenome polyprotein2.7.7.480.504
4mk828QGenome polyprotein2.7.7.480.492
1yvfPH7Polyprotein/0.475
3u4o08EGenome polyprotein2.7.7.480.461
2fvc888Polyprotein/0.440