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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gnvXNZGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gnvXNZGenome polyprotein2.7.7.481.000
3d5m4MSGenome polyprotein2.7.7.480.559
4mk728OGenome polyprotein2.7.7.480.552
3d28B34Genome polyprotein2.7.7.480.545
3hkwIX6Genome polyprotein2.7.7.480.544
3ska053Genome polyprotein2.7.7.480.544
3h59H59Genome polyprotein2.7.7.480.540
4mk928RGenome polyprotein2.7.7.480.535
3h2lYAKGenome polyprotein2.7.7.480.513
3ske054Genome polyprotein2.7.7.480.511
3g86T18Genome polyprotein2.7.7.480.500
3csoXNIGenome polyprotein2.7.7.480.492
4eaw0NQGenome polyprotein2.7.7.480.487
2gc8885Polyprotein/0.481
3u4o08EGenome polyprotein2.7.7.480.480
2yoj8Y6Genome polyprotein2.7.7.480.477
3hkyIX6Genome polyprotein2.7.7.480.475
3u4r08FGenome polyprotein2.7.7.480.470
3uph0C1Genome polyprotein2.7.7.480.469
3igvB80Genome polyprotein2.7.7.480.466
3upi0C2Genome polyprotein2.7.7.480.456