sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3gbu	ATP	Uncharacterized sugar kinase PH1459	2.7.1

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3gbu	ATP	Uncharacterized sugar kinase PH1459	2.7.1	1.000
3lki	ATP	Fructokinase	/	0.520
3ih0	ANP	Uncharacterized sugar kinase PH1459	2.7.1	0.473
5c3y	AN2	Ribokinase	/	0.471
2aa0	MTP	Adenosine kinase	2.7.1.20	0.470
5c3z	ACP	Ribokinase	/	0.451
1nyt	NAP	Shikimate dehydrogenase (NADP(+))	/	0.449
1rfv	ADP	Pyridoxal kinase	2.7.1.35	0.449
2giv	ACO	Histone acetyltransferase KAT8	/	0.447
1lik	ADN	Adenosine kinase	2.7.1.20	0.446
1gqt	ACP	Ribokinase	/	0.445
1iol	EST	Estradiol 17-beta-dehydrogenase 1	1.1.1.62	0.441