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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gagFMNPutative NADH dehydrogenase NAD(P)H nitroreductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3gagFMNPutative NADH dehydrogenase NAD(P)H nitroreductase/1.000
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.465
2lbaCHOFatty acid binding protein 6/0.450
1bwsNDPGDP-L-fucose synthase/0.447
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
2j08IRFDeoxyribodipyrimidine photo-lyase4.1.99.30.444
1p0hCOAMycothiol acetyltransferase2.3.1.1890.440