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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3frdDHFDihydrofolate reductase1.5.1.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3frdDHFDihydrofolate reductase1.5.1.31.000
3fywXCFDihydrofolate reductase1.5.1.30.697
3freTOPDihydrofolate reductase1.5.1.30.628
3fraI2HDihydrofolate reductase1.5.1.30.616
3frfXCFDihydrofolate reductase1.5.1.30.615
3srqQ19Dihydrofolate reductase1.5.1.30.612
3fy9XCFDihydrofolate reductase1.5.1.30.598
4fgh0U6Dihydrofolate reductase1.5.1.30.597
3jw5TOPDihydrofolate reductase/0.591
4xe606UDihydrofolate reductase1.5.1.30.591
4fgg0U5Dihydrofolate reductase1.5.1.30.575
2w3vTOPDihydrofolate reductase/0.570
1vj3TABDihydrofolate reductase1.5.1.30.565
2zzaFOLDihydrofolate reductase/0.564
3m08RARDihydrofolate reductase1.5.1.30.562
1dg5TOPDihydrofolate reductase1.5.1.30.561
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.560
3ia4MTXDihydrofolate reductase/0.558
3dfrMTXDihydrofolate reductase1.5.1.30.557
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.555
2w9gTOPDihydrofolate reductase1.5.1.30.553
3jwcEKBDihydrofolate reductase/0.553
3fy8XCFDihydrofolate reductase1.5.1.30.551
3qlzQLZUncharacterized protein/0.551
3eej53RUncharacterized protein/0.550
3sh25DRDihydrofolate reductase1.5.1.30.550
2fziDH3Dihydrofolate reductase1.5.1.30.549
3srwQ27Dihydrofolate reductase1.5.1.30.547
3eel53TUncharacterized protein/0.545
3jw3TOPDihydrofolate reductase/0.542
4ele31IDihydrofolate reductase/0.542
3eek53SUncharacterized protein/0.539
3td8D2RDihydrofolate reductase1.5.1.30.539
3cseN22Uncharacterized protein/0.536
3qlxQLRUncharacterized protein/0.536
3srrQ20Dihydrofolate reductase1.5.1.30.536
1ia1TQ3Dihydrofolate reductase1.5.1.30.534
2fzhDH1Dihydrofolate reductase1.5.1.30.534
3sa16DRDihydrofolate reductase/0.533
1m78CLZDihydrofolate reductase1.5.1.30.531
1dajMOTDihydrofolate reductase1.5.1.30.530
3eem53VUncharacterized protein/0.529
3fyvXCFDihydrofolate reductase1.5.1.30.529
1cd2FOLDihydrofolate reductase1.5.1.30.527
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.525
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.524
1rx3MTXDihydrofolate reductase1.5.1.30.522
3ix9MTXDihydrofolate reductase1.5.1.30.521
1ia2TQ4Dihydrofolate reductase1.5.1.30.520
1m7aMQUDihydrofolate reductase1.5.1.30.519
4h9814QUncharacterized protein/0.519
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.518
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.518
3qly55VUncharacterized protein/0.517
4ixeIXEDihydrofolate reductase1.5.1.30.517
3qls55VDihydrofolate reductase1.5.1.30.514
1aoeGW3Dihydrofolate reductase1.5.1.30.513
3sruQ26Dihydrofolate reductase1.5.1.30.513
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.512
1ddsMTXDihydrofolate reductase1.5.1.30.511
3tqbFOLDihydrofolate reductase/0.509
4elf35IDihydrofolate reductase/0.508
4h9614QDihydrofolate reductase1.5.1.30.507
4ixgIXGDihydrofolate reductase1.5.1.30.507
4p66MTXDihydrofolate reductase/0.506
1df7MTXDihydrofolate reductase1.5.1.30.505
4nx6FOLDihydrofolate reductase1.5.1.30.505
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.503
3cd2MTXDihydrofolate reductase1.5.1.30.502
3qlrQLRDihydrofolate reductase1.5.1.30.499
4elb34SDihydrofolate reductase/0.497
4nx7FOLDihydrofolate reductase1.5.1.30.497
1klkPMDDihydrofolate reductase1.5.1.30.496
1m13HYFNuclear receptor subfamily 1 group I member 2/0.495
3qlwN22Dihydrofolate reductase1.5.1.30.495
4m2xTMQDihydrofolate reductase1.5.1.30.495
3datMTXDihydrofolate reductase/0.494
1dg7WRBDihydrofolate reductase1.5.1.30.492
1m79MQ1Dihydrofolate reductase1.5.1.30.492
3tq9MTXDihydrofolate reductase/0.492
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.491
1iwjCAMCamphor 5-monooxygenase1.14.15.10.488
3dauMTXDihydrofolate reductase1.5.1.30.488
3sgy06WDihydrofolate reductase1.5.1.30.488
4kjjFOLDihydrofolate reductase1.5.1.30.488
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.486
3jwm5WBDihydrofolate reductase/0.486
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.486
1zrzBI1Protein kinase C iota type2.7.11.130.484
1disBDMDihydrofolate reductase1.5.1.30.483
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.483
4elh53IDihydrofolate reductase/0.482
1ia4TQ6Dihydrofolate reductase1.5.1.30.481
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.481
4kkyCAMCamphor 5-monooxygenase1.14.15.10.481
3srsM23Dihydrofolate reductase1.5.1.30.479
3sa27DRDihydrofolate reductase/0.478
4x5gFOLDihydrofolate reductase1.5.1.30.478
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.477
2qbnCAMCamphor 5-monooxygenase1.14.15.10.477
3sai9DRDihydrofolate reductase/0.477
4h9753SDihydrofolate reductase1.5.1.30.476
4ixfIXFDihydrofolate reductase1.5.1.30.475
1ly3COGDihydrofolate reductase1.5.1.30.474
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.474
1og5SWFCytochrome P450 2C9/0.473
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.473
1jomFFODihydrofolate reductase1.5.1.30.472
1phgMYTCamphor 5-monooxygenase1.14.15.10.472
3qyoQ24Dihydrofolate reductase1.5.1.30.472
2cd2FOLDihydrofolate reductase1.5.1.30.471
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.470
2zaxCAMCamphor 5-monooxygenase1.14.15.10.470
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.470
3fwfCAMCamphor 5-monooxygenase1.14.15.10.469
4h9506UDihydrofolate reductase1.5.1.30.469
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.468
2qblCAMCamphor 5-monooxygenase1.14.15.10.468
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.468
4g8zTOPDihydrofolate reductase1.5.1.30.467
2vg7NNIGag-Pol polyprotein2.7.7.490.466
2yee2ECHeat shock protein HSP 90-alpha/0.466
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
3fwiCAMCamphor 5-monooxygenase1.14.15.10.465
3m09RARDihydrofolate reductase1.5.1.30.465
2feuCAMCamphor 5-monooxygenase1.14.15.10.464
2h2qNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.464
3vt7VDXVitamin D3 receptor/0.464
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.464
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.464
1iwiCAMCamphor 5-monooxygenase1.14.15.10.463
1re7FOLDihydrofolate reductase1.5.1.30.463
3meeT27Gag-Pol polyprotein2.7.7.490.463
4hle17VPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.463
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.462
1ia3TQ5Dihydrofolate reductase1.5.1.30.462
2cppCAMCamphor 5-monooxygenase1.14.15.10.462
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.462
2vn0TDZCytochrome P450 2C8/0.462
3ml8ML8Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.462
3mdvCL6Cholesterol 24-hydroxylase/0.461
1nooCAHCamphor 5-monooxygenase1.14.15.10.460
2zawCAMCamphor 5-monooxygenase1.14.15.10.460
3clbTMQBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.460
3opdHIEHeat shock protein 83/0.460
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.459
1rc4DDFDihydrofolate reductase1.5.1.30.459
1yi3LY2Serine/threonine-protein kinase pim-12.7.11.10.459
1zeoC01Peroxisome proliferator-activated receptor gamma/0.459
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.459
4x5fFOLDihydrofolate reductase1.5.1.30.459
6cp4CAMCamphor 5-monooxygenase1.14.15.10.459
2harOCCVitamin D3 receptor/0.458
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.458
4lcg1WMUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.458
1fpqSAMIsoliquiritigenin 2'-O-methyltransferase/0.457
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.457
2acwUPGGlycosyltransferase/0.457
3koo24DBifunctional epoxide hydrolase 23.3.2.100.457
1hfqMOTDihydrofolate reductase1.5.1.30.456
1uymPU3Heat shock protein HSP 90-beta/0.456
2bxmIMNSerum albumin/0.456
2hb7O1CVitamin D3 receptor/0.456
3p3e3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.456
4hgt15GCasein kinase I isoform delta2.7.11.10.456
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.456
4kl9NDPDihydrofolate reductase1.5.1.30.456
1t88CAMCamphor 5-monooxygenase1.14.15.10.455
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.455
2y3rTRKTamL/0.455
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
1x2hLPALipoate-protein ligase A6.3.1.200.454
3d80Q22Dihydrofolate reductase1.5.1.30.454
3gwfFADCyclohexanone monooxygenase/0.454
3l3rOAGDihydrofolate reductase1.5.1.30.454
1kzjCB3Thymidylate synthase/0.453
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.453
2ittAEEEpidermal growth factor receptor2.7.10.10.453
3ey9TDPPyruvate dehydrogenase [ubiquinone]1.2.5.10.453
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
1gebCAMCamphor 5-monooxygenase1.14.15.10.452
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
3h3t16HCollagen type IV alpha-3-binding protein/0.452
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.452
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
5cwa0GAAnthranilate synthase component 14.1.3.270.452
1uyuCAMCamphor 5-monooxygenase1.14.15.10.451
2a1nCAMCamphor 5-monooxygenase1.14.15.10.451
2hamC33Vitamin D3 receptor/0.451
3kpzZNEVitamin D3 receptor/0.451
4fhh0U3Vitamin D3 receptor A/0.451
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.451
4tuvCPZCytochrome P450 1191.140.451
1t86CAMCamphor 5-monooxygenase1.14.15.10.450
1uy7PU4Heat shock protein HSP 90-alpha/0.450
2b0m201Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.450
2vf0F89Thymidylate synthase/0.450
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.450
1ly4COQDihydrofolate reductase1.5.1.30.449
2vzmNRBCytochrome P450 monooxygenase PikC/0.449
3tea4CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.449
4bb3KKAIsopenicillin N synthase1.21.3.10.449
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
4egnTWOCytochrome P450/0.449
4m6l21VDihydrofolate reductase1.5.1.30.449
1e7vLY2Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.448
1hzzNADNAD(P) transhydrogenase subunit alpha part 11.6.1.20.448
1zgaHMKIsoflavone 4'-O-methyltransferase/0.448
2cig1DGDihydrofolate reductase1.5.1.30.448
3a0iAJIGlucokinase2.7.1.20.448
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.448
4cd2FOLDihydrofolate reductase1.5.1.30.448
4eufNADTrans-2-enoyl-CoA reductase [NADH]/0.448
4j6cSTRCytochrome P450 monooxygenase/0.448
4wq5ATPtRNA N6-adenosine threonylcarbamoyltransferase/0.448
1dg8NDPDihydrofolate reductase1.5.1.30.447
1gufNDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial1.3.1.100.447
1pjkANPCasein kinase II subunit alpha2.7.11.10.447
1x7hNDPPutative ketoacyl reductase1.3.10.447
2o4jVD4Vitamin D3 receptor/0.447
2qboCAMCamphor 5-monooxygenase1.14.15.10.447
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
3gc9B45Mitogen-activated protein kinase 112.7.11.240.447
3h3r14HCollagen type IV alpha-3-binding protein/0.447
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.447
4ia2BIVVitamin D3 receptor A/0.447
4kbyC2EStimulator of interferon genes protein/0.447
5hi6MTXDihydrofolate reductase/0.447
1dz6CAMCamphor 5-monooxygenase1.14.15.10.446
1eupASD6-deoxyerythronolide B hydroxylase/0.446
1jioDEB6-deoxyerythronolide B hydroxylase/0.446
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
1phePIYCamphor 5-monooxygenase1.14.15.10.446
1t87CAMCamphor 5-monooxygenase1.14.15.10.446
3cbsR12Cellular retinoic acid-binding protein 2/0.446
3mdmFJZCholesterol 24-hydroxylase/0.446
3qm4PN0Cytochrome P450 2D6/0.446
3wrlCAMCamphor 5-monooxygenase1.14.15.10.446
4nb6444Nuclear receptor ROR-gamma/0.446
1w1rZEACytokinin dehydrogenase 11.5.99.120.445
2hc4VDXVitamin D3 receptor A/0.445
2q5g1FAPeroxisome proliferator-activated receptor delta/0.445
2y4gTIRTamL/0.445
3inxJZCHeat shock protein HSP 90-alpha/0.445
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.445
3zw9NADPeroxisomal bifunctional enzyme1.1.1.350.445
4g3rCAMCamphor 5-monooxygenase1.14.15.10.445
4lch1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.445
4xiwAZMCarbonic anhydrase, alpha type/0.445
5dcyNAPIridoid synthase1.3.1.990.445
1uyfPU1Heat shock protein HSP 90-alpha/0.444
2b378PSEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
2eq7NADDihydrolipoyl dehydrogenase/0.444
2hasC3OVitamin D3 receptor/0.444
2hcdBIVVitamin D3 receptor A/0.444
2of4979Tyrosine-protein kinase Lck2.7.10.20.444
2znnS44Peroxisome proliferator-activated receptor alpha/0.444
3ictADPCoenzyme A disulfide reductase/0.444
3ua506XCytochrome P450 2B61.14.130.444
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.444
4f640S8Fibroblast growth factor receptor 1/0.444
4fhi0S4Vitamin D3 receptor A/0.444
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.444
4l4cCAMCamphor 5-monooxygenase1.14.15.10.444
4l4fCAMCamphor 5-monooxygenase1.14.15.10.444
5c8yACPTubulin tyrosine ligase/0.444
2uzhIPE2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/0.443
2zb45OPProstaglandin reductase 21.3.1.480.443
3clbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
3csdEMOPutative ketoacyl reductase1.3.10.443
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.443
3nr4PYVAbscisic acid receptor PYL2/0.443
4eevL1XHepatocyte growth factor receptor2.7.10.10.443
4ek1CAMCamphor 5-monooxygenase1.14.15.10.443
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4hnc0UTMandelate racemase/0.443
4i7fNVEGag-Pol polyprotein2.7.7.490.443
4ia3BIVVitamin D3 receptor A/0.443
4ia7BIVVitamin D3 receptor A/0.443
5cp4CAMCamphor 5-monooxygenase1.14.15.10.443
5cshATPCasein kinase II subunit alpha2.7.11.10.443
1lcoPPYCytochrome b2, mitochondrial1.1.2.30.442
1lhwESMSex hormone-binding globulin/0.442
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.442
2drcMTXDihydrofolate reductase1.5.1.30.442
2hw2RFPRifampin ADP-ribosyl transferase/0.442
2x6dX6DAurora kinase A2.7.11.10.442
3fl9TOPDihydrofolate reductase/0.442
3h1vTK1Glucokinase2.7.1.20.442
3o0g3O0Cyclin-dependent-like kinase 52.7.11.10.442
3sx2NADUncharacterized protein/0.442
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.442
3uowXMPGMP synthase [glutamine-hydrolyzing]/0.442
3zu2NAIEnoyl-[acyl-carrier-protein] reductase [NADH]/0.442
4ia1BIVVitamin D3 receptor A/0.442
4kne1CYDihydrofolate reductase1.5.1.30.442
4q0a4OAVitamin D3 receptor A/0.442
5k2cZMAAdenosine receptor A2a/0.442
1bygSTUTyrosine-protein kinase CSK/0.441
1jipKTN6-deoxyerythronolide B hydroxylase/0.441
1s3yTQTDihydrofolate reductase1.5.1.30.441
1tlcF89Thymidylate synthase/0.441
2clqSTUMitogen-activated protein kinase kinase kinase 52.7.11.250.441
2hy81STSerine/threonine-protein kinase PAK 12.7.11.10.441
2ph5NADHomospermidine synthase/0.441
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.441
2qbmCAMCamphor 5-monooxygenase1.14.15.10.441
2yeiXQIHeat shock protein HSP 90-alpha/0.441
2zbzVDXVitamin D3 dihydroxylase/0.441
3cz09ODPheromone-binding protein ASP1/0.441
3d0bSNXHeat shock protein HSP 90-alpha/0.441
3d7kD7KBenzaldehyde lyase/0.441
3l0lHC3Nuclear receptor ROR-gamma/0.441
3tk3CPZCytochrome P450 2B41.14.14.10.441
3vt9YI4Vitamin D3 receptor/0.441
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.441
4fic0ULProto-oncogene tyrosine-protein kinase Src2.7.10.20.441
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.441
1ek2CDUBifunctional epoxide hydrolase 2/0.440
1menGARTrifunctional purine biosynthetic protein adenosine-32.1.2.20.440
1osvCHCBile acid receptor/0.440
1uyePU9Heat shock protein HSP 90-alpha/0.440
1yrcCAMCamphor 5-monooxygenase1.14.15.10.440
1yrdCAMCamphor 5-monooxygenase1.14.15.10.440
2c3lIDZSerine/threonine-protein kinase Chk12.7.11.10.440
2xgs44PUncharacterized protein/0.440
3gbuATPUncharacterized sugar kinase PH14592.7.10.440
3inwJZBHeat shock protein HSP 90-alpha/0.440
3mnrSD1Heat shock protein HSP 90-alpha/0.440
3oafOAGDihydrofolate reductase1.5.1.30.440
3vt45YIVitamin D3 receptor/0.440
3wrhCAMCamphor 5-monooxygenase1.14.15.10.440
4c1iEH9cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.440
4q71FADBifunctional protein PutA/0.440
4y8wSTRSteroid 21-hydroxylase/0.440