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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fr0AJBGlucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3fr0AJBGlucokinase2.7.1.21.000
3a0iAJIGlucokinase2.7.1.20.648
4mleVO1Glucokinase2.7.1.20.600
3vey0H5Glucokinase2.7.1.20.582
4mlhVO2Glucokinase2.7.1.20.571
4l3q926Glucokinase2.7.1.20.544
1v4sMRKGlucokinase2.7.1.20.536
3id8MRKGlucokinase2.7.1.20.531
3f9mMRKGlucokinase2.7.1.20.507
4ixc1JDGlucokinase2.7.1.20.506
4dhyS41Glucokinase2.7.1.20.460
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.446
4q73FADBifunctional protein PutA/0.445
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.444
1eioGCHGastrotropin/0.443