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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fl8RARDihydrofolate reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3fl8RARDihydrofolate reductase/1.000
4ele31IDihydrofolate reductase/0.661
4elf35IDihydrofolate reductase/0.627
4elg52JDihydrofolate reductase/0.566
4elb34SDihydrofolate reductase/0.554
4elh53IDihydrofolate reductase/0.550
4elb34RDihydrofolate reductase/0.537
2qk8MTXDihydrofolate reductase/0.519
1diuBDMDihydrofolate reductase1.5.1.30.503
3och2MXDihydrofolate reductase1.5.1.30.490
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.478
1ddsMTXDihydrofolate reductase1.5.1.30.468
1disBDMDihydrofolate reductase1.5.1.30.468
3fl9TOPDihydrofolate reductase/0.463
3clbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.456
1dyjDDFDihydrofolate reductase1.5.1.30.454
1rf7DHFDihydrofolate reductase1.5.1.30.453
1draMTXDihydrofolate reductase1.5.1.30.450
2drcMTXDihydrofolate reductase1.5.1.30.449
1tdrMTXDihydrofolate reductase1.5.1.30.448
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.442