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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f6rFMNFlavodoxin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3f6rFMNFlavodoxin/1.000
1bu5RBFFlavodoxin/0.576
1c7fFMNFlavodoxin/0.548
1xyyFMNFlavodoxin/0.528
5tgzFMNCannabinoid receptor 1/0.496
1j9gFMNFlavodoxin/0.492
5xraFMNCannabinoid receptor 1/0.486
4fx2FMNFlavodoxin/0.479
1azlFMNFlavodoxin/0.476
4araC56Acetylcholinesterase3.1.1.70.471
5fx2FMNFlavodoxin/0.467
4y7cFMNNADPH--cytochrome P450 reductase/0.466
1akrFMNFlavodoxin/0.464
1akwFMNFlavodoxin/0.457
4ey6GNTAcetylcholinesterase3.1.1.70.456
1akuFMNFlavodoxin/0.449
2fx2FMNFlavodoxin/0.449
1fx1FMNFlavodoxin/0.445
1wsbFMNFlavodoxin/0.441
4fhd0TTSpore photoproduct lyase/0.441