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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f03FMNPentaerythritol tetranitrate reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3f03FMNPentaerythritol tetranitrate reductase/1.000
3p8jFMNPentaerythritol tetranitrate reductase/0.726
3p84FMNPentaerythritol tetranitrate reductase/0.712
3p74FMNPentaerythritol tetranitrate reductase/0.630
1h63FMNPentaerythritol tetranitrate reductase/0.629
2abbFMNPentaerythritol tetranitrate reductase/0.601
1h50FMNPentaerythritol tetranitrate reductase/0.590
3p62FMNPentaerythritol tetranitrate reductase/0.585
3p82FMNPentaerythritol tetranitrate reductase/0.582
3p67FMNPentaerythritol tetranitrate reductase/0.561
1vyrFMNPentaerythritol tetranitrate reductase/0.555
3p8iFMNPentaerythritol tetranitrate reductase/0.537
4jicFMNGTN Reductase/0.505
1icsFMN12-oxophytodienoate reductase 11.3.1.420.486
1h51FMNPentaerythritol tetranitrate reductase/0.482
1icpFMN12-oxophytodienoate reductase 11.3.1.420.476
1icqFMN12-oxophytodienoate reductase 11.3.1.420.469
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.452
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.451
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.445
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.445
3gkaFMNN-ethylmaleimide reductase/0.442