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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ez3IPEFarnesyl pyrophosphate synthase, putative

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ez3IPEFarnesyl pyrophosphate synthase, putative/1.000
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.786
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.740
3rywK9HFarnesyl pyrophosphate synthase, putative/0.565
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.555
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.551
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.544
3rbmB73Farnesyl pyrophosphate synthase, putative/0.534
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.529
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.507
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.499
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.100.486
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.481
4kqsIPEFarnesyl pyrophosphate synthase2.5.1.100.475
4lfgIPEPutative geranyltranstransferase/0.469