Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3elySAHMethyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3elySAHMethyltransferase/1.000
4ctkSAMGenome polyprotein/0.566
5jjrSAHGenome polyprotein/0.563
4ctjSAMGenome polyprotein/0.561
3evcSAHGenome polyprotein2.1.1.560.545
3p8zSAHGenome polyprotein2.1.1.560.516
2p41SAHGenome polyprotein/0.515
2px5SAHGenome polyprotein2.7.7.480.511
4k6mSAHGenome polyprotein/0.510
3p97SAMGenome polyprotein2.1.1.560.501
2pxaSAHGenome polyprotein2.7.7.480.497
2px2SAHGenome polyprotein2.7.7.480.496
5jjsSAHGenome polyprotein/0.494
3eldSFGMethyltransferase/0.487
3eluSAMMethyltransferase/0.484
2xbmSAHGenome polyprotein/0.483
2wa2SAMGenome polyprotein/0.482
3p8z36AGenome polyprotein2.1.1.560.475
3lkzSFGGenome polyprotein/0.451